Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma02g01696 ATGGCAGACCCTTACTCCAATTTCTTCTCACCAGGTAGTTTCTTCCACCACTATCCTTCTCCAAACCCTTCACCCCACCACCATCCCTATGCTCACAACTTCCTCAACCAAAATGGTTCCAACATCAATAACCACAACACCTTTTTCCACTTCCACCACTTTCAAACCACTATTTGTTCTTCTTCACCTCCTTCCCCTCCCTTGAGAGAAGCCCTTCCTCTTCTAACTCTCAGCCCAAGAAATGAAGAGGAACAAGAAGAGGATGACCAAGATCAAGATCAGGAGATTCTTCAGGAAAATATTTGCACTGCCATGGATGTGGAAGAGAATTACAACAACAGAACCCTTCACCTTCACCCAAAAGGGGAGGAACAAGATCAAGAAGATACTGATGAAAGTGTCACTGTTGCACTGCACATAGGGTTGCCAAGCCCTAGTGCTGCTGAGATAGCTTCTGTTCTTTCTTCAGCAGCTTGTTCTACAGACAAAGAACAACAAGGAGGACATGGAGTTGGTAATAACAACAGTAATAATGGGAGTGAGGATTTTTCTTCTTCAGGGTTCTTGTCTAACAGGCTCAACAAGGGACAGTACTGGATCCCTACCCCTTCTCAGATTCTCATTGGTCCTACTCAGTTCTCTTGTCCCGTTTGTTGCAAAACCTTCAACAGATACAACAACATGCAGATGCATATGTGGGGGCATGGATCACAGTACAGAAAAGGGCCTGAATCTCTGAGGGGTACCCAACCAACAGGTATGCTAAGGCTTCCATGCTATTGCTGTTCCCCAGGTTGCAGGAACAACATTGATCACCCAAGAGCAAAGCCCCTCAAAGACTTCAGAACCCTCCAAACACACTACAAGAGGAAGCATGGGATTAAGCCCTTCATGTGCAGAAAATGTGGCAAGGCCTTTGCTGTGAGGGGTGATTGGAGAACACATGAGAAGAACTGTGGCAAGCTTTGGTATTGCATCTGTGGATCTGATTTCAAGCACAAGAGGTCCCTTAAGGATCACATCAAAGCCTTTGGAAGTGGCCATGCAGCTTACGGGATTGATGGATTTGAAGAAGAAGAAGAGCCTGCATCTGAAGTAGAACAAGATAATGACTGA 1116 0.4552 MADPYSNFFSPGSFFHHYPSPNPSPHHHPYAHNFLNQNGSNINNHNTFFHFHHFQTTICSSSPPSPPLREALPLLTLSPRNEEEQEEDDQDQDQEILQENICTAMDVEENYNNRTLHLHPKGEEQDQEDTDESVTVALHIGLPSPSAAEIASVLSSAACSTDKEQQGGHGVGNNNSNNGSEDFSSSGFLSNRLNKGQYWIPTPSQILIGPTQFSCPVCCKTFNRYNNMQMHMWGHGSQYRKGPESLRGTQPTGMLRLPCYCCSPGCRNNIDHPRAKPLKDFRTLQTHYKRKHGIKPFMCRKCGKAFAVRGDWRTHEKNCGKLWYCICGSDFKHKRSLKDHIKAFGSGHAAYGIDGFEEEEEPASEVEQDND 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma02g01696 371 MobiDBLite consensus disorder prediction 158 185 - -
Gma02g01696 371 ProSitePatterns Zinc finger C2H2 type domain signature. 215 235 IPR013087 -
Gma02g01696 371 ProSiteProfiles Zinc finger C2H2 type domain profile. 297 317 IPR013087 -
Gma02g01696 371 SUPERFAMILY beta-beta-alpha zinc fingers 279 317 IPR036236 -
Gma02g01696 371 Coils Coil 80 100 - -
Gma02g01696 371 Gene3D Classic Zinc Finger 212 235 - -
Gma02g01696 371 SMART c2h2final6 297 317 IPR013087 -
Gma02g01696 371 SMART c2h2final6 213 235 IPR013087 -
Gma02g01696 371 ProSiteProfiles Zinc finger C2H2 type domain profile. 213 240 IPR013087 -
Gma02g01696 371 PANTHER ZINC FINGER PROTEIN WIP2 33 371 IPR043584 GO:0003700|GO:0010468
Gma02g01696 371 Gene3D Classic Zinc Finger 275 351 - -
Gma02g01696 371 PANTHER ZINC FINGER PROTEIN WIP2-LIKE 33 371 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma02g01696 Gma-Chr2 36133987 36136293 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma02g01696 1 371 C2H2 Transcription Factor Family AT3G57670 60.759 1.04e-146 418
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Gma02g01696 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma02g01696 - - gmx:100783088 695.271
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma02g01696 02 36133987 36136293 Gma02g01696 02 36133987 36136293 ECH
Gma02g01696 02 36133987 36136293 Gma13g03043 13 44817029 44819284 ECH
Gma02g01696 02 36133987 36136293 Gma15g00318 15 2744930 2747071 ECH
Gma19g01345 19 42731793 42734337 Gma02g01696 02 36133987 36136293 PCT
Gma03g01291 03 39021640 39024510 Gma02g01696 02 36133987 36136293 PCT
Gma02g01696 02 36133987 36136293 Gma19g01345 19 42731793 42734337 PCT
Gma02g01696 02 36133987 36136293 Gma03g01291 03 39021640 39024510 PCT