Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma02g01686 ATGGAGAGTAGTGGCAAGATGGAAGACTATGAAGTGATCCAGCAAATTGGAAGAGGAGCACTTGGTGCAACTTTTCTTGTTCTACACAAGATTGAGAATAAGAGGTATGTGCTGAAGAAAATTCGCTTGGCCAAGCAAGCAGACAAGTCCAAAGTGACAGCACAACAAGAGATGGACCTAATAGCAAAACTACATTACCCATATATTGTGGAGTACAAAGATGCTTGGGTGGAGAAGGATGACTACATATGCATTATAACTGGCTATTGTGAAGGAGGTGACATGGCTGCAAATATAAAGAAAGCTCGGGGATCTTATTTTTCAGAGGAGAAAGTTTGCAAGTGGTTGACTCAGTTGTTACTGGCTGTGGACTACCTTCACTCCAATCGGGTACTCCATAGAGATATCAAGTGTTCCAACATATTCCTTACCAAAGAAAATAACATTCGGCTAGGTGAATTTGGACTTGCAAAGCTTCTTAATACTGAAGACCTTACTTCCCCGGTTGTTGGAACTCTAAACTACATGTGTCCTGAGGCCTTTGCTGGTATGCCTTATGGTTATAAATCTGATATGTGGTCACTCGGTTGCTGCATGTTTGAAATTGTTGCACATCAACCGGCATTTCGTGCTCCAGACAGGGCTGGACTTATCAATAAAATAAATAGATCATCCATATCTCCACTGCCAATTGTTTACTCTTCCACACTGAAACAACTTATCAAGAGCATGCTGAGGAAAAACCCAGAACATAGACCAACAGCATCTGAATTATTAAAGAATCCTCATTTACAACCTTATGTTCTACGCTGTCGTAATGCATCATCTATTTTTCTACCAGTACATCTTATAAATAGTAACTCAAAGGATAAAACAAAAACCAAATCTAGTAGTGGTAGCAAAGACCATTGGGAAAGGGAGGCAGCATTGGCTGGATTGGTAAATCGTTTGGATCGACTTTATCCATTAGAGGGAAATGGAGATGTACAGTCACGGAATTGGCATAATGATGGCAAGCTAGCAGTGTCAACCAGTGCAGAAGACAACCTTGAGACTAAAATGGTTGATTTGACCAGCTATACTGTGGAGTTTTCTACTAGTATTAGCGGCTCGAAAGATGGATCAACAACATCTGAATCAACTGTCTGCAGTGTGTGCAAGGAAGGAGACTCTAAAAATAGACTTACAAGGGACACAGCTGACAGTGAGATCACTTCAAAGAGTACAATGGATTCTGGGCTTGAAGAACAAGGACTTGATTGTCACAAGTCATATGCAATTGACATAAATACGGTGATTAATAAAGTTGAAGATACTTTTTCCAATGAAGATTTCAATACAGATGAAGCACTTAGTGAAGGTGTcaaacctgaggactccatgactacagaagatgaagataaactttccaaagaaggttttgatagagctgaaacacaagagaaagatgataaacctgaggactccagtaactcattgtctagtgaagacagcaacagcaacgataaagaggggtccattgatgagGAAAGGTCATCACCAATTGCACATGCGGTTAAGGTTGAGCATGACACTGACACTGGAAACAGCTTGAAGGAAAATGAAAACCCTAAAGTGTTGACAGAAGACTCATGCATGGACAGCTTGGCTTCTGAGAGTAATGAAATGCGTCCAGGTAAGGATGAAGGCCAAGCAGATACACACACAATCAGTTGTTCAACGCATAAAGAAGTTGACAATGCTGTCATGGCTGATAAGCCACCAAATGGCGTTTCATTAAGGACACGCATATCAAGAGGTGGTGATAATACTTGCCATCAAAGAGCTGATGCTCTGGAATCTCTGCTCGAGTTATGTGCGCAGCTACTTCAGCAAGGAAAGCTTGAAGAGCTTGCTGCTGTGCTGAGACCATTTGGAGAAGATGCTGTATCTGTATCATCCAGAGAAACAGCAATATGGCTTACAAAAAGCCTGGTGGCCTCACAAAATCTTAATCCTGAGATATAG 2007 0.3787 MESSGKMEDYEVIQQIGRGALGATFLVLHKIENKRYVLKKIRLAKQADKSKVTAQQEMDLIAKLHYPYIVEYKDAWVEKDDYICIITGYCEGGDMAANIKKARGSYFSEEKVCKWLTQLLLAVDYLHSNRVLHRDIKCSNIFLTKENNIRLGEFGLAKLLNTEDLTSPVVGTLNYMCPEAFAGMPYGYKSDMWSLGCCMFEIVAHQPAFRAPDRAGLINKINRSSISPLPIVYSSTLKQLIKSMLRKNPEHRPTASELLKNPHLQPYVLRCRNASSIFLPVHLINSNSKDKTKTKSSSGSKDHWEREAALAGLVNRLDRLYPLEGNGDVQSRNWHNDGKLAVSTSAEDNLETKMVDLTSYTVEFSTSISGSKDGSTTSESTVCSVCKEGDSKNRLTRDTADSEITSKSTMDSGLEEQGLDCHKSYAIDINTVINKVEDTFSNEDFNTDEALSEGVKPEDSMTTEDEDKLSKEGFDRAETQEKDDKPEDSSNSLSSEDSNSNDKEGSIDEERSSPIAHAVKVEHDTDTGNSLKENENPKVLTEDSCMDSLASESNEMRPGKDEGQADTHTISCSTHKEVDNAVMADKPPNGVSLRTRISRGGDNTCHQRADALESLLELCAQLLQQGKLEELAAVLRPFGEDAVSVSSRETAIWLTKSLVASQNLNPEI 668
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma02g01686 668 PANTHER SERINE/THREONINE-KINASE NEK7-LIKE PROTEIN 512 654 - -
Gma02g01686 668 PANTHER SERINE/THREONINE-PROTEIN KINASE NEK 512 654 - -
Gma02g01686 668 SMART serkin_6 10 264 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma02g01686 668 Gene3D Transferase(Phosphotransferase) domain 1 90 276 - -
Gma02g01686 668 MobiDBLite consensus disorder prediction 390 415 - -
Gma02g01686 668 PANTHER SERINE/THREONINE-KINASE NEK7-LIKE PROTEIN 4 461 - -
Gma02g01686 668 MobiDBLite consensus disorder prediction 444 543 - -
Gma02g01686 668 ProSiteProfiles Protein kinase domain profile. 10 268 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma02g01686 668 MobiDBLite consensus disorder prediction 501 540 - -
Gma02g01686 668 ProSitePatterns Serine/Threonine protein kinases active-site signature. 131 143 IPR008271 GO:0004672|GO:0006468
Gma02g01686 668 MobiDBLite consensus disorder prediction 449 491 - -
Gma02g01686 668 Gene3D Phosphorylase Kinase; domain 1 2 89 - -
Gma02g01686 668 CDD STKc_Nek 9 264 - -
Gma02g01686 668 Pfam Protein kinase domain 10 263 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma02g01686 668 PANTHER SERINE/THREONINE-PROTEIN KINASE NEK 4 461 - -
Gma02g01686 668 SUPERFAMILY Protein kinase-like (PK-like) 7 297 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma02g01686 Gma-Chr2 35849335 35857810 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma02g01686 10 262 MAP Kinase Kinase Kinase AT3G13530 32.549 4.14e-32 131
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK NEK Gma02g01686 Pkinase 1.3e-61 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma02g01686 K08857 - gmx:100796658 912.524
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma02g01686 02 35849335 35857810 Gma02g01686 02 35849335 35857810 ECH
Gma19g01346 19 42762181 42768568 Gma02g01686 02 35849335 35857810 PCT
Gma03g01293 03 39054485 39059232 Gma02g01686 02 35849335 35857810 PCT
Gma02g01686 02 35849335 35857810 Gma19g01346 19 42762181 42768568 PCT
Gma02g01686 02 35849335 35857810 Gma03g01293 03 39054485 39059232 PCT