Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma02g01677 ATGGATTCAGAAAACGTGCCAAACTTGAGCGACGTCACTAAGAAGACCAAAGGTCGGCAAAAGATAGAGATGAAGACGATAGCCAACAAGTGTAGCCTTCAAGTGACATTTTCAAAGCATCGAACTGGAGTTTTCAAGAAAGCGAGTGAGCTTGCCACCCTTTGTGGTGTGGACCTTGCTGTGATTATGTTCTCTCCCAATAACCATGTTTACTCCTTCGGTAGCCCTAATGTGGATTCTGTAATCCAACGTTATACGACAGAGGGCCCACCTCCCCTCTTCACCCAAGACCTCAATGAGGCCCCTTGCACCATGGATGAGGGTGAGCTCCAAGCACACCTCAACTGTTTGTCCAACCAAATTGACGCGGAGAAGCAACGTGTAGAGGATCTAAACCATTTGTTGATGGCTGCGAAGGATCACATCTGGTGGGATGTGCCAATTGAAAGCATGAGCAATGCCCAACTCGAGAAGTACCATAAGATGTTGAAGGAGATAAAGTTGAAACACATGAGACATACACATGGAGAATGA 534 0.4644 MDSENVPNLSDVTKKTKGRQKIEMKTIANKCSLQVTFSKHRTGVFKKASELATLCGVDLAVIMFSPNNHVYSFGSPNVDSVIQRYTTEGPPPLFTQDLNEAPCTMDEGELQAHLNCLSNQIDAEKQRVEDLNHLLMAAKDHIWWDVPIESMSNAQLEKYHKMLKEIKLKHMRHTHGE 177
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma02g01677 177 SUPERFAMILY SRF-like 18 93 IPR036879 GO:0003677|GO:0046983
Gma02g01677 177 SMART madsneu2 17 76 IPR002100 GO:0003677|GO:0046983
Gma02g01677 177 CDD MADS_MEF2_like 18 85 IPR033896 GO:0000977|GO:0045944
Gma02g01677 177 PRINTS MADS domain signature 19 39 IPR002100 GO:0003677|GO:0046983
Gma02g01677 177 PRINTS MADS domain signature 39 54 IPR002100 GO:0003677|GO:0046983
Gma02g01677 177 PRINTS MADS domain signature 54 75 IPR002100 GO:0003677|GO:0046983
Gma02g01677 177 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL62 16 167 - -
Gma02g01677 177 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 27 73 IPR002100 GO:0003677|GO:0046983
Gma02g01677 177 PANTHER MADS BOX PROTEIN 16 167 - -
Gma02g01677 177 ProSiteProfiles MADS-box domain profile. 17 77 IPR002100 GO:0003677|GO:0046983
Gma02g01677 177 Coils Coil 114 141 - -
Gma02g01677 177 Gene3D - 29 93 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma02g01677 Gma-Chr2 35577530 35578091 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma02g01677 12 167 Type I MADS-box Gene Family AT5G60440 42.500 6.04e-38 130
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Gma02g01677 SRF-TF 2.1e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma02g01677 - - gmx:100808929 236.498