Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma02g01671 ATGGCAAGGATTCCTGACAAGATTAGGTCTATTGATGGATCAAAAGAAACGCTTAAGCTTGCTGTTAGGATCACCGATCTTTGGTTCGTTGGGACTCCTAACAAGTCTGAGCAAGCGGAAATGGTTTTTGTTGATTCAGAGGGTGATCAAATTCATGATATTTGTAAATCGGACCACCTCAAGTCTTGGAAAGTTGATTTAAAAGAGAATTGCACTTATGTTATGCATAATTTCAAAGTTGTTAAGAATGATGGTCAATTTAGAGTGTGCGAACATGAGTACAAGTTATTTTTTATTGGAGTGACGGTTGTTAGAGAAGCTAATTTGCATGAACTGCCTTTTAAGGAATTTAGATTTGTTGAATTTGCAAATGTTGTTGCTGGCAATTTTGTGTCTGGCCTGTTGATTGATATTATTGGGGTCGTTGATATGGTGGTCTTTCGGTATGTTTCATCGAAAAATACCAGGGTTGTTTTTAGAATGAATGATTTGAGGTTATGTGGTGAAATTTTGTCTTGCACACTTTGGGAGAATTACTGTACTCAGTTCCTATCCTATTTGAATGAACGTGGGGATGATGGGCCGATGGTTATTATATTGACACATGCCAGAATAAAAGATGCACAGGGTAATTATCCAACTTCAGTGAGCAATTCCTTCAAGGCGTCAAAACTATTGATTAATGATCCTATATTGGAAATTCAGGAATTTAAAGAGAGGCTTTTAGATTTAGGTGTTGAGGTGAGTCGAGTTTTGCTACCTGGCGATCAAGCAAGCTCACAAGTTTCAGGGGGAAGTCAGCTATCATCAAAGGATTCGTTTCTTTCAAAGGCTGAAGCCAAAACTATTTTAGAAATCAATGCCATTTCTGAGGACGTTGTTTGTGTTACGGTGGGGACTATTAGAAAAATAGTCATGGATAACCATTCATGGTGTTATCCAGCCTGTGCTCAATGTCATAGGAAAACTGACATCCAAACAGGACCATTCACATGTGGATGTGGCAAGGATAATGATCAACCTGTTCTGAGGTATAGAGTTGAAGTCATGGTTACCCAAAACAATGAGAGTAGCAAATTTTTGCTCTGGGACCGTGAATGTGCTGAATTGATTGGTGAAACAGCTGATGATGTGAATAGGGTCAAGATTGAAGATGGTGATCTTGATTTGAATGCTTCCCCTCAAGCACTTGACAAATTCTTGGGTCATGTGCTTGCTTTTAAGGTCAGGATTCAATCAAAATTCAAAAATGCAGTTGTACTAAGATACTCAAAAGACCTGGATTTGATCAATGCTATTCTCGAGATGCTGCCTGATAGTGAGGCATGTTCCAAAATAGATCCTTCCAATGTTGATTGCAATGATGCTGCACATGCTGAATGTCAATCTCTGTCTGTCATAGCTGACCATGATCCGGTTGCGGGATTGCCTTTAACACCCAAAAAGCGGATGTCATCTGATGAAGCCGATGATGAGTTAGGGAGCTCTCAAATTTCGCCAGCCTAA 1506 0.3944 MARIPDKIRSIDGSKETLKLAVRITDLWFVGTPNKSEQAEMVFVDSEGDQIHDICKSDHLKSWKVDLKENCTYVMHNFKVVKNDGQFRVCEHEYKLFFIGVTVVREANLHELPFKEFRFVEFANVVAGNFVSGLLIDIIGVVDMVVFRYVSSKNTRVVFRMNDLRLCGEILSCTLWENYCTQFLSYLNERGDDGPMVIILTHARIKDAQGNYPTSVSNSFKASKLLINDPILEIQEFKERLLDLGVEVSRVLLPGDQASSQVSGGSQLSSKDSFLSKAEAKTILEINAISEDVVCVTVGTIRKIVMDNHSWCYPACAQCHRKTDIQTGPFTCGCGKDNDQPVLRYRVEVMVTQNNESSKFLLWDRECAELIGETADDVNRVKIEDGDLDLNASPQALDKFLGHVLAFKVRIQSKFKNAVVLRYSKDLDLINAILEMLPDSEACSKIDPSNVDCNDAAHAECQSLSVIADHDPVAGLPLTPKKRMSSDEADDELGSSQISPA 501
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma02g01671 501 CDD RPA1_DBD_C 277 411 IPR013955 -
Gma02g01671 501 SUPERFAMILY Nucleic acid-binding proteins 281 415 IPR012340 -
Gma02g01671 501 Gene3D - 6 106 IPR012340 -
Gma02g01671 501 Gene3D - 261 434 IPR012340 -
Gma02g01671 501 Pfam Replication factor-A C terminal domain 299 414 IPR013955 -
Gma02g01671 501 Pfam Domain of unknown function DUF223 40 127 IPR003871 -
Gma02g01671 501 SUPERFAMILY Nucleic acid-binding proteins 117 241 IPR012340 -
Gma02g01671 501 PANTHER RPA1 DOMAIN PROTEIN, PUTATIVE-RELATED 11 391 - -
Gma02g01671 501 CDD RPA1_DBD_B_like 137 241 - -
Gma02g01671 501 CDD RPA1_DBD_A_like 19 104 - -
Gma02g01671 501 PANTHER REPLICATION FACTOR A 1, RFA1 11 391 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Gma02g01671 501 SUPERFAMILY Nucleic acid-binding proteins 8 106 IPR012340 -
Gma02g01671 501 MobiDBLite consensus disorder prediction 475 501 - -
Gma02g01671 501 Gene3D - 111 247 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma02g01671 Gma-Chr2 35382665 35385133 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma02g01671 1 389 Core DNA Replication Machinery Family AT5G08020 24.627 1.01e-15 78.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma02g01671 - - gmx:102660767 800.431