Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma02g01659 ATGGGTTCTGCTTCAGTCACCAAAGCACCACCCTCTTCCTCCTCATCACCCAACTCTTCTTCTACTGAGTCCCTTGATGGCTTGAAGTTTGGCCAGAAAATCTACTTTGAGGAAGTGAGTGTTGCTGCAGCAGCAGCAACAACAACTCAAGGGGGCAACAAAACAAGAGGTGGGGTTTCTGCTTCAAAGAAGGGAAGGGGTGGCTCAGTGCAAGCTCCTAGGTGTCAGGTTGCGGGCTGCAAAGTAGATCTGAGTGGTGCTAAGGCTTACTATTCTAGGCACAAAGTTTGTGCCATGCACTCCAAGTCCCCTACTGTCACTGTTGCTGGTTTGGAGCAAAGGTTTTGCCAACAGTGTAGCAGGTTTCATCTGCTTTCTGAATTTGATCAAGGAAAACGTAGCTGCCGCAAGCGACTTGCTGGCCATAATGAGCGCCGACGAAAGCCCCCACCAAGCTCCATATTAACCTCTCGCTATGGCAGACTCTCTCTGCCTATTTTTGATAACAATGGTCGAGACGATGGCTTTCTGATGGAATTTGCTTCATACCCCAAGCTTACTTTGAGAAATACATTGCCAACTCAAAGATCAACTGAGCCGGCTCCAGGGAACCATGCTGCAACACTCACCTGGCAAGGAGGTTCAGACACTCCATCTGAATTTTTCCTGCAAGGATCAGGGAGTAGTGGTGGAACAAGCTTCCTTAGTTCAAAACATCCCTTAGTGGAAAGTTACACTGGAGTCACTGACTCAAACTGTGCTCTCTCTCTTCTGTCAAGTCAAACCTGGGGTTCCAGAAACACAGCCCCAGCAACAAGTTTTGAACTGAACAACAACTTGTTCAATTTCAATGGGACATCCATGACACAATTTGCTGTGGCGTCTTTGCAAGCTGCAGCCATCCATCAACTTCCAAATGCTACCTCATGGTTGTACCTAAAGGGAGTTGATTCTGGTAATTGTTCGCCTGAGCGTGTCCCCAATCACGGTCTTGCTCAAATTTCTCCCCCTCTTCATAGCCATGTTCATAGTGAGCTTGATGTGTCACAGCAGGGCAGGAGGCATTACATGATCTAG 1077 0.4791 MGSASVTKAPPSSSSSPNSSSTESLDGLKFGQKIYFEEVSVAAAAATTTQGGNKTRGGVSASKKGRGGSVQAPRCQVAGCKVDLSGAKAYYSRHKVCAMHSKSPTVTVAGLEQRFCQQCSRFHLLSEFDQGKRSCRKRLAGHNERRRKPPPSSILTSRYGRLSLPIFDNNGRDDGFLMEFASYPKLTLRNTLPTQRSTEPAPGNHAATLTWQGGSDTPSEFFLQGSGSSGGTSFLSSKHPLVESYTGVTDSNCALSLLSSQTWGSRNTAPATSFELNNNLFNFNGTSMTQFAVASLQAAAIHQLPNATSWLYLKGVDSGNCSPERVPNHGLAQISPPLHSHVHSELDVSQQGRRHYMI 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma02g01659 358 Pfam SBP domain 75 148 IPR004333 GO:0003677
Gma02g01659 358 Gene3D - 66 136 IPR036893 GO:0003677|GO:0005634
Gma02g01659 358 SUPERFAMILY SBT domain 73 154 IPR036893 GO:0003677|GO:0005634
Gma02g01659 358 MobiDBLite consensus disorder prediction 1 25 - -
Gma02g01659 358 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 17 1 357 - -
Gma02g01659 358 ProSiteProfiles Zinc finger SBP-type profile. 72 149 IPR004333 GO:0003677
Gma02g01659 358 MobiDBLite consensus disorder prediction 46 71 - -
Gma02g01659 358 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 1 357 IPR044817 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma02g01659 Gma-Chr2 34739771 34745212 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma02g01659 28 260 SBP-box Gene Family AT2G42200 48.954 1.17e-59 195
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Gma02g01659 SBP 1.1e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma02g01659 - - gmx:100819941 674.47