Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma02g01622 ATGGAGCAAACCACTCTCGAAGCCATTCAGTTCAACGAGGAAATCCAAGGTCTCATGGCTGCTCCGGCGCCGGAAACCGCCAATTCCTTCACCGCGCTGCTCGAGCTTCCCCCGACGCAGGCCGTCGAACTCTTCCACTCGCCGGAGCGCGCCGGGAAACCGCCGCGCCACAGTCCCAAATCCTATCCGTTGACCTCCTTCGCCGCCTCCGCATccgcccccgccaccgccaccgccaccgccaacgccaACCTCACCTTTCCCTCCAACGCCGCGCTGATCGATCGCGCCGCCAGGTTCTCCGTCTTCGCCGGCCAGAGCTCGAACTCGAACTCGCCGGAGGTGAAGCGAGAGCTGCCGGAGACCGATTCCAACCCGAGCTCCACTCACGGCGGCGGCGGCGGAGGCTCCGTCTCCGATCTCGCCGTGGAGAACCAGAATCTGAAAACTGCGAAGAGGAAGGAGCGAGAGAAGAAGGTTAAAGCGTCGTCGAAGAAGAGCAAGAGCGTCGCCGCCGCCGACGAGATTTCCGGCGACGGCGAGAAGCTTCCGTACGTTCACGTTCGAGTTCGTCGAGGTCAAGCCACTGATAGCCATAGCTTAGCAGAAAGGGCTAGGAGAGAGAAGATAAATGCTCGGATGAAGCTTTTACAAGAGCTGGTCCCGGGTTGCAACAAGATATCGGGAACGGCATTGGTTCTGGATAAAATCATCAACCATGTGCAATCTCTACAGAATGAAGTGGAGATATTATCAATGAAACTGGCAGCAGTTAACCCAGTAATTGATTTCAACCTCGACAGCTTACTGGCTACTGAAGGAGTGACTCCAATGGACTGTAACTTCCCTCCGACAGTTGCACCTGTCATGTGGCCAGAAATCCCACAGAACGGAAACAGACAACAATATCAGCAACCATGGCCGTTTGATGCACTCCACCAACCCCTTTGGGGGAGGGAAGAAGACAACACTAATTTCATGACTCCAGAAAACTCACTCTTGAGTTATGACTCATCGGCAAATTCAGTATCTCTGCATTCAAATCAGTTGAAGATGGAGCTCTAA 1065 0.5249 MEQTTLEAIQFNEEIQGLMAAPAPETANSFTALLELPPTQAVELFHSPERAGKPPRHSPKSYPLTSFAASASAPATATATANANLTFPSNAALIDRAARFSVFAGQSSNSNSPEVKRELPETDSNPSSTHGGGGGGSVSDLAVENQNLKTAKRKEREKKVKASSKKSKSVAAADEISGDGEKLPYVHVRVRRGQATDSHSLAERARREKINARMKLLQELVPGCNKISGTALVLDKIINHVQSLQNEVEILSMKLAAVNPVIDFNLDSLLATEGVTPMDCNFPPTVAPVMWPEIPQNGNRQQYQQPWPFDALHQPLWGREEDNTNFMTPENSLLSYDSSANSVSLHSNQLKMEL 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma02g01622 354 MobiDBLite consensus disorder prediction 124 146 - -
Gma02g01622 354 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 1 354 IPR024097 GO:0006355
Gma02g01622 354 Coils Coil 234 254 - -
Gma02g01622 354 Coils Coil 138 158 - -
Gma02g01622 354 CDD bHLH_AtBPE_like 184 269 - -
Gma02g01622 354 SMART finulus 200 250 IPR011598 GO:0046983
Gma02g01622 354 MobiDBLite consensus disorder prediction 105 175 - -
Gma02g01622 354 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 194 244 IPR011598 GO:0046983
Gma02g01622 354 Pfam Helix-loop-helix DNA-binding domain 198 245 IPR011598 GO:0046983
Gma02g01622 354 Gene3D - 191 262 IPR036638 GO:0046983
Gma02g01622 354 PANTHER TRANSCRIPTION FACTOR BHLH FAMILY-RELATED 1 354 - -
Gma02g01622 354 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 192 263 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma02g01622 Gma-Chr2 33128725 33134808 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma02g01622 2 354 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G57800 47.532 6.00e-94 283
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gma02g01622 HLH 4.5e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma02g01622 - - gmx:100799133 628.246