Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma02g01616 ATGACTCCTAGGTCGACAGCTACAAAATCAGAACCGTGGAGCTGGAAGGGAAAACCGTCAAGCTGCAGATTGTTTTTCCATAGTTACACACATCACACCTTTTTTTTttcttcttctcattctcattctcattcttcttctcCACCGACACTCTCTTCTTCTCGGCCCCTATTCGTCTCATCCGCTGCGAACTCCAACGATTTCCTCAACTTCTCGCTCGATAAGGTATGTTCGCCGCGTGAGTTTCTGGCTACCGCGATGGCGTCCAAAGGTCCCAGGTCGAGGATTGATCACGAGAGCAGAGCCAAACGCCAGAAGGCTCTTGAAGCTCCAAGGGAGCCTCGGCGACCCAAAACTCATTGGGACCATGTCTTAGAAGAGATGGTCTGGTTATCAAAGGATTTTGAGTCAGAGAGGAAATGGAAATTAGCTCAGGCAAAAAAAGTAGCTTTAAGAGCCAGCAAAGGCATGTTAGATCAGGCTACAAGAGGTGAAAAGAAGATGAAGGAAGAGGAGCAGCGGTTAAGAAAGGTTGCACTTAATATTTCTAAGGATGTTAAGAAATTCTGGACAAAAATAGAAAAACTGGTTCTTTACAAACATCAAATGGAACTCGATGAGAAGAAGAAAAAGGCACTTGACAAACAGCTTGAGTTTCTATTAGGGCAAACCGAGAGGTACTCAACAATGTTGGCTGAAAATCTTGTAGATCCTTATAAATCAGCAGAGAATAATTCTGCAGAGCACCACATGAGTATTCAATGCAAAGATGTACATGATGTTATTAATGAACCTAAGGAAGCTGATGTTGTAGAGTATCAATCAGATGCAGCTGACAATGATGAAGAATATGATGTACAATATGATGATGAATCGGAGGATGATGAGCGAACAATTGAGCAAGATGAGGCTCTTATAACTAAAGAAGAAAGGCAAGAGGAATTGGCCGCTTTGCGTGATGAAATGGATCTTCCAATTGAGGAGTTACTTAAACGTTATGCTGGGGATAAAGGAGAATCTGTAATGAAAGAAAGTAGTCCAGAGCATAGTGAAGATGGTGGGAAAATAGTTAGAGCTGGTGATGAAAACGGAGATGATCTTTTATCTGTAAGCAAAATTGGCACAAGCAACTCCAGCATAGTCTCTGGTCGACGTTGTGATGAAAGTAATGGTGATGTTGCTACACCAACAAACAATTTATCTCAATGTGAGAATGGTCAATCTGAAAATCTAAAAGAGGTTCCCAGTGAGACAGCGAATGAAGATTTTTCATATGATTTTACTGATGAAGAGGAAGATGGTGACTTTTTGCTTGGCATAGAAGATAAGGATGATGAAACAACCTTATCTGAGGAGGAACAACTGGAAAGAGTTGATGCAATTGATCCCAAGGACGAGATTGCATTGTTACAAAAGGAGAGTGTCATGCCTGTTGAGGAATTGCTTGCAAGATATAAAAGGGACCCAAGTGACGATGAAGATGGGGAATATGAATCTGATTATGCTTCTGCTTTATCAGAGAACAATTCGGATTCTCCAGTCCATGAGGATGCTGGGCAGAAGGATCCTGCCATTCCTATGGATGAAGATATCAAGTCTGGTGAGCACCTGGCTGCCATACAGTCCCAGGAAGAACAGTGGGAATCACCTCATGAAAATTTAGAAAAAAGAGAAAGTGAGGATATAATTGCTGATGCAGCAGCTGCTGCAAGATCAGCACAACCCACTGGAAACACCTTCTCCACAACTAGTGTGCGTACAAAGTTCCCTTTTCTTCTCAAGTACTCTCTTCGTGAGTATCAACATATTGGATTGGATTGGCTTGTCACGATGTATGAAAAAAGACTGAATGGAATTTTGGCAGATGAAATGGGGCTTGGAAAAACAATTATGACTATTTCTTTGCTTGCACATCTTGCTTGTGATAAAGGGATTTGGGGCCCACATTTAATTGTTGTACCAACTAGTGTAATGCTTAACTGGGAGACTGAATTTCTGAAATGGTGTCCTGCCTTTAAAATTTTGACTTATTTTGGAAGTGCAAAGGAGCGAAAACTTAAAAGGCAAGGATGGTTAAAACCTAACTCCTTTCATGTATGCATAACAACTTATAGATTAGTTATTCAGGACTCCAAAGTTTTCAAGCGCAAAAAGTGGAAATACTTGATCTTAGATGAAGCTCATCTCATTAAAAACTGGAAGTCACAAAGGTGGCAGACACTCTTGAATTTCAATTCAAAACGACGGATTCTCTTGACTGGTACGCCACTACAGAATGATCTCATGGAACTGTGGTCTCTCATGCATTTCTTAATGCCCCATGTTTTCCAGTCGCATCAAGAGTTTAAGGATTGGTTTAGTAATCCTATATCAGGGATGGTAGAGGGTGAAGAAAAAGTTAATAAGGAGGTTGTTGATCGCCTTCATAATGTACTTCGTCCATTCTTACTTCGTCGACTTAAGCGAGATGTGGAGAAGCAACTTCCAATGAAGCATGAACATGTCATATATTGTAGACTATCAAAGAGGCAGCGGAATCTGTATGAAGATTTCATTGCTAGTTCAGAGACCCAAGCCACACTTGCAAGTGCCAATTTTTTTGGGATGATTAGTATTATCATGCAACTTCGTAAGGTTTGCAATCATCCTGATCTATTTGAGGGTCGTCCTATTGTCAGTTCTTTTGATATGCGTGGTATTGATATTCAGTTAAGTTCTTCTGTTTGCTCCATGCTTTTGCCTAGTCCCTTTTCAACGGTGGACCTAAGAGGTTTGGGTCTTTTATTCACTCATCTTGACTATAGCATGGCTGCTTGGGAAAGTGATGAAGTACAAACTATTGAGACCCCTGTGACTTTAATCATGGAACGTACTGATATGGCCGAACTAGAAGTAATTAGGCCACATAAATGTCAAAAAAAGTTGCAAGGAACAAACATTTTTGAAGAGATCCAATGGGCGATCTGGGAAGAGAGGCTAAAACAGACGAAGGAACATGCAGCAGCTATTGCATGGTGGAACTCCTTGAGATGTAAAAAAAGACCCATCTACTCGACAACTCTAAGGGATCTTGTTGCCTTAAGACATCCTGTAAATGATATTCATCAGGTGAAAGCAAACCCTGTTTCATACTTGTACTCATCAAAGCTAGCTGACATTGTTCTCTCCCCGGTTGAACGATTTCAGAAGATGACTGATGTGGTTGAAAGCTTCATGTTTGCAATTCCAGCTGCACGGGCACCCTCTCCTGTATGTTGGTGCAGTACAAGTGAGACTAGTGTGTTTCTGCACCCATCTTACAAGCAGAAATGCTCTGAAGTTCTGTTACCGCTGCTGTCACCAATCAGGCCTGCAATTGTCCGCCGGCAAGTGTATTTCCCTGACAGGCGTCTTATACAATTTGACTGTGGGAAACTGCAAGAACTAGCAATTTTGTTGAGGAGATTAAAATCAGAAGGTCACCGAGCTTTGATATTCACCCAGATGACAAAGATGCTTGACATATTAGAGGCATTCATTAATTTGTATGGGTATACATACATGCGCTTAGATGGATCAACCCAACCGGAGGAGAGACAGACCTTAATGCAGCGCTTTAACACCAACCCCAAATATTTTCTTTTCATCTTGTCAACTCGTAGTGGGGGTGTTGGTATCAATTTAGTTGGAGCTGACACAGTTATTTTTTATGATAGTGACTGGAATCCTGCTATGGATCAACAGGCACAAGATCGGTGCCACAGAATTGGTCAGACACGCGAAGTTCGTATCTATAGATTGATTAGTGAAAGCACCATTGAGGAGAATATTTTGAAAAAAGCAAATCAGAAGCGTGCACTTGATAATCTAGTTATACAAAGTGGGGGTTATAATACTGAGTTCTTCAAGAAGCTTGATCCTATGGAACTATTTTCAGGTCATAGAACACTTTCAATAAAAAATATGCCGAAGGAGAAAAACCAGAACAATGGGGAAGTTTCTGTAACTAATGCAGATGTTGAGGCTGCATTAAAATGTGTAGAAGATGAAGCAGATTATATGGCTTTGAAGAAAGTTGAACTGGAAGAGGCTGTGGACAATCAGGAGTTTACAGAAGAAGTCATTGGGAGATTTGAAGACGATGAATATGTAAATGAGGATGATGAGACTGCAGAATTAGGTGAATCTGTTTTGAATTTAAATAAAGAGAATGCGTTAATGTTAAATGGAAGTGATCATAAGGAAGATAGACCGCCACACTCTGTTGCTGGCAAAGAAGATGATCCTGACATGCTGGCTGAAGTCAAACAGATGGCTGCAGCTGCAGCTGCAGCTGGACAAGCTATCTCAGCATTTGAGAATGAGCTACGCCCTATTGATCGATATGCCATTCGTTTTATGGAACTGTGGGATCCAATTATAGATAAAACAGCCTTGGAATCTGAAGTCAGGATTGAGGACACAGAATGGGAGTTGGATCGCATTGAAAAGTACAAGGAGGAGATGGAAGCCGAAATTGATGAAGATGAGGAACCTCTTGTATATGAAAGCTGGGATGCTGATTATGCAACTACGGCATATCGACAGCATGTAGAGGCCTTGGCTCAACATCAGTTAATGGAGGAACTCGAATATGAAGCTAGACAGAAAGAAGCCGAGGAAACTTGTGATTCTAAAAAGACTCAAACACCAGGGGATTCGAAGCCCAAATCTAAAAAGAAACCCAAGAAGGCAAAGTTCAAATCTCTAAAGAAAGGATCTTTAACCTCTGGCTTGAGACCTGTCAAAGAAGAGTCACAAGCAGAGCCTATGAACATAGATGATGAGGATGTCACTGGTGTAGATTTTCTGTCTCCAAATTCAACCAAGCAGAAAAAACGTAAGAAGTCTAAATTAACTACTGATGGTGAAGAAGAAAAGAGACTTAAGAAGTCTAAAAAGTCCAAGAGGGATCCTCCTGACATTTATGCTTCCGATTTAGAATCCAACTCATTAGTTGTGCAGGATGAACATGCAGAATCAAAGACTTGTGAAAGTCTGGTTGATTTAGAACAGAAAACAGCAAGCAGGAGTAAGATAGGAGGAAAAATATCCATCACTCCTATGCCTGTAAAACGGGTCTGGATGATAAAACCGGAAAAATTGAAAAAGGGACATCATTGGTCCAAAGATTGTATTCCACCAGCTGATTTTTGGCTGCCTCAGGAGGATGCAATATTATGTGCTGTTGTTCATGAATATGGTCCTAACTGGAGTTTGGTTAGTGAAACGCTTTATGGCATGAGTGGTGGTGGGTCATACAGGGGAAGATATCGTCATCCTGTCCATTGCTGTGAGAGGTTCGGAGAACTATTCCAAAAGTATGTCTTGCTGTCACTGGACAATGCAAATCATGAGAAGATCAACAGTCCAGGCTCTGGAAAGGCTCTTCTTAAAGTTACAGAGGATAACATTCGGATGCTGTTAGATGTTGCTTCTGAGCAGGTAAATAGGGAGTTACTGCTGCAGAAGCATTTTTTTGCATTGCTTTCATCTGTCTGGAAGGTGGCATCACATGTTGACCGCAGGCGAAATCCATTACCCACCTGCAATGGTCTCTATTTCGATCAGAGTTTCTATACTTCCATTGGCCAGCCTTCACAAAATTCCTTGAAGAAATCCTCTAAAAGGATGACATTTACAAATTTAGCCCAGAGCAAGAAGTTAGTAGCAGCTGCACTTGATGATATCACAACTAGGCAAGTGAATGACAAAGTCATTCTCTCTAACCAAGGTGAAGACATGCCAGTAAGTGCAGATCAGCTGGATATAACACTGGAGTTCACAAAAGAGGATAGCGACGTCCTATCTTCATTTCCATCTGTTATAAATTTATCAATAATTGGGACTGAACCAACACCATCTTTAAATAAGCAAACAGGAGAAGATGATCTTAAAGTTGGTTTGTTCATTGCTGAGAATCGTTTCAGGGAGGCAGCAAGAGTTTGTGAAGAAGACAGCTCTGGATGGGCATCATCTGCATTCCCAACCAACGATGCAAGGTCTCGAGCTGGATCCAGGATACAATCCTCCGGAAAGCAGAAGTCTTCCATGTCCGACTCTTCTAAGCCTTCTAGGTCAAAGTCCAAAAAAGCTTCAATGGATCCTAGTGAAATGCATCACCATCAGGCTGATTCTAAATTCCAGTCAATGCCATCACTCAAAGATCTGAGAATTGATCTCACTTCATTAACTACTGATGAAGTTGGAATTGATAGTATGGGTAGCATTTTCTCCTTTGACTTGAATGGGGAAAGTTCATTGGAAATGGAGAGTGTTGGAATGATCCCACATGATTATGTTGCTGGTTTAATCTCAGACCTTGATGATTGTACAGCATTCCCTGAATATACTGACATTAGATAA 6384 0.409 MTPRSTATKSEPWSWKGKPSSCRLFFHSYTHHTFFFSSSHSHSHSSSPPTLSSSRPLFVSSAANSNDFLNFSLDKVCSPREFLATAMASKGPRSRIDHESRAKRQKALEAPREPRRPKTHWDHVLEEMVWLSKDFESERKWKLAQAKKVALRASKGMLDQATRGEKKMKEEEQRLRKVALNISKDVKKFWTKIEKLVLYKHQMELDEKKKKALDKQLEFLLGQTERYSTMLAENLVDPYKSAENNSAEHHMSIQCKDVHDVINEPKEADVVEYQSDAADNDEEYDVQYDDESEDDERTIEQDEALITKEERQEELAALRDEMDLPIEELLKRYAGDKGESVMKESSPEHSEDGGKIVRAGDENGDDLLSVSKIGTSNSSIVSGRRCDESNGDVATPTNNLSQCENGQSENLKEVPSETANEDFSYDFTDEEEDGDFLLGIEDKDDETTLSEEEQLERVDAIDPKDEIALLQKESVMPVEELLARYKRDPSDDEDGEYESDYASALSENNSDSPVHEDAGQKDPAIPMDEDIKSGEHLAAIQSQEEQWESPHENLEKRESEDIIADAAAAARSAQPTGNTFSTTSVRTKFPFLLKYSLREYQHIGLDWLVTMYEKRLNGILADEMGLGKTIMTISLLAHLACDKGIWGPHLIVVPTSVMLNWETEFLKWCPAFKILTYFGSAKERKLKRQGWLKPNSFHVCITTYRLVIQDSKVFKRKKWKYLILDEAHLIKNWKSQRWQTLLNFNSKRRILLTGTPLQNDLMELWSLMHFLMPHVFQSHQEFKDWFSNPISGMVEGEEKVNKEVVDRLHNVLRPFLLRRLKRDVEKQLPMKHEHVIYCRLSKRQRNLYEDFIASSETQATLASANFFGMISIIMQLRKVCNHPDLFEGRPIVSSFDMRGIDIQLSSSVCSMLLPSPFSTVDLRGLGLLFTHLDYSMAAWESDEVQTIETPVTLIMERTDMAELEVIRPHKCQKKLQGTNIFEEIQWAIWEERLKQTKEHAAAIAWWNSLRCKKRPIYSTTLRDLVALRHPVNDIHQVKANPVSYLYSSKLADIVLSPVERFQKMTDVVESFMFAIPAARAPSPVCWCSTSETSVFLHPSYKQKCSEVLLPLLSPIRPAIVRRQVYFPDRRLIQFDCGKLQELAILLRRLKSEGHRALIFTQMTKMLDILEAFINLYGYTYMRLDGSTQPEERQTLMQRFNTNPKYFLFILSTRSGGVGINLVGADTVIFYDSDWNPAMDQQAQDRCHRIGQTREVRIYRLISESTIEENILKKANQKRALDNLVIQSGGYNTEFFKKLDPMELFSGHRTLSIKNMPKEKNQNNGEVSVTNADVEAALKCVEDEADYMALKKVELEEAVDNQEFTEEVIGRFEDDEYVNEDDETAELGESVLNLNKENALMLNGSDHKEDRPPHSVAGKEDDPDMLAEVKQMAAAAAAAGQAISAFENELRPIDRYAIRFMELWDPIIDKTALESEVRIEDTEWELDRIEKYKEEMEAEIDEDEEPLVYESWDADYATTAYRQHVEALAQHQLMEELEYEARQKEAEETCDSKKTQTPGDSKPKSKKKPKKAKFKSLKKGSLTSGLRPVKEESQAEPMNIDDEDVTGVDFLSPNSTKQKKRKKSKLTTDGEEEKRLKKSKKSKRDPPDIYASDLESNSLVVQDEHAESKTCESLVDLEQKTASRSKIGGKISITPMPVKRVWMIKPEKLKKGHHWSKDCIPPADFWLPQEDAILCAVVHEYGPNWSLVSETLYGMSGGGSYRGRYRHPVHCCERFGELFQKYVLLSLDNANHEKINSPGSGKALLKVTEDNIRMLLDVASEQVNRELLLQKHFFALLSSVWKVASHVDRRRNPLPTCNGLYFDQSFYTSIGQPSQNSLKKSSKRMTFTNLAQSKKLVAAALDDITTRQVNDKVILSNQGEDMPVSADQLDITLEFTKEDSDVLSSFPSVINLSIIGTEPTPSLNKQTGEDDLKVGLFIAENRFREAARVCEEDSSGWASSAFPTNDARSRAGSRIQSSGKQKSSMSDSSKPSRSKSKKASMDPSEMHHHQADSKFQSMPSLKDLRIDLTSLTTDEVGIDSMGSIFSFDLNGESSLEMESVGMIPHDYVAGLISDLDDCTAFPEYTDIR 2127
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma02g01616 2127 MobiDBLite consensus disorder prediction 369 414 - -
Gma02g01616 2127 SMART helicmild6 1167 1250 IPR001650 -
Gma02g01616 2127 Gene3D - 566 842 IPR038718 -
Gma02g01616 2127 MobiDBLite consensus disorder prediction 92 118 - -
Gma02g01616 2127 CDD SF2_C_SNF 1126 1261 - -
Gma02g01616 2127 Gene3D - 1104 1355 IPR027417 -
Gma02g01616 2127 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 821 1322 IPR027417 -
Gma02g01616 2127 MobiDBLite consensus disorder prediction 514 528 - -
Gma02g01616 2127 MobiDBLite consensus disorder prediction 440 463 - -
Gma02g01616 2127 MobiDBLite consensus disorder prediction 87 118 - -
Gma02g01616 2127 Gene3D - 843 918 - -
Gma02g01616 2127 MobiDBLite consensus disorder prediction 1623 1649 - -
Gma02g01616 2127 PANTHER HELICASE SRCAP-RELATED 88 2045 - -
Gma02g01616 2127 MobiDBLite consensus disorder prediction 1543 1562 - -
Gma02g01616 2127 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1141 1291 IPR001650 -
Gma02g01616 2127 Coils Coil 1478 1498 - -
Gma02g01616 2127 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 569 819 IPR027417 -
Gma02g01616 2127 MobiDBLite consensus disorder prediction 1543 1656 - -
Gma02g01616 2127 SMART bromneu2 109 180 IPR014012 -
Gma02g01616 2127 Pfam SNF2-related domain 614 886 IPR000330 GO:0005524|GO:0140658
Gma02g01616 2127 MobiDBLite consensus disorder prediction 1993 2055 - -
Gma02g01616 2127 Gene3D - 1721 1781 - -
Gma02g01616 2127 ProSiteProfiles HSA domain profile. 108 180 IPR014012 -
Gma02g01616 2127 MobiDBLite consensus disorder prediction 1 20 - -
Gma02g01616 2127 Pfam HSA domain 113 179 IPR014012 -
Gma02g01616 2127 MobiDBLite consensus disorder prediction 1 15 - -
Gma02g01616 2127 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 609 774 IPR014001 -
Gma02g01616 2127 MobiDBLite consensus disorder prediction 334 362 - -
Gma02g01616 2127 CDD DEXQc_SRCAP 597 819 - -
Gma02g01616 2127 MobiDBLite consensus disorder prediction 1996 2029 - -
Gma02g01616 2127 MobiDBLite consensus disorder prediction 334 418 - -
Gma02g01616 2127 MobiDBLite consensus disorder prediction 274 297 - -
Gma02g01616 2127 Pfam Helicase conserved C-terminal domain 1142 1250 IPR001650 -
Gma02g01616 2127 PANTHER HELICASE SRCAP 88 2045 - -
Gma02g01616 2127 Coils Coil 301 321 - -
Gma02g01616 2127 MobiDBLite consensus disorder prediction 483 528 - -
Gma02g01616 2127 MobiDBLite consensus disorder prediction 2030 2051 - -
Gma02g01616 2127 SMART ultradead3 593 786 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma02g01616 Gma-Chr2 32912775 32935424 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma02g01616 617 889 RAD5 or RAD16-like Gene Family AT5G43530 30.124 3.91e-28 122
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Gma02g01616 SNF2_N 6.3e-70 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma02g01616 - - gmx:100794898 3924.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma02g01616 02 32912775 32935424 Gma02g01616 02 32912775 32935424 ECH