Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma02g01614 ATGGACGTTCGCAAGCGCGGAAGGCCCGACGTCAACCTTAACGGCGCCGTTAAGAAGACCAAGCAAGAATTGGAGTCCTTATCAAGTGGTGTAGGAAGCAAATCGAAGCCATGTACCAAGTTTTTCAGTACTGCTGGCTGCCCATTTGGTGAGGGCTGCCACTTCTTACATTATGTTCCAGGTGGTTACAATGTTGTTGCCCATATGATGAATTTAAAACCCGCGGCTCCTCCACCAAGAACCGTTGCTGCACCACCACCCATCCCGAATGGTTCTGCTCCATCTGCTGTTAAAACCCGCATATGTAACAAATTCAATACTGCCGAAGGATGCAAATTTGGTGACAAGTGCCATTTTGCCCATGGTGAATGGGAACTTGGCAAACCTATTGCTCCATCAATTGATGATCATCATCATCATCGTCCTTTGGGACCTCCAGCAGGTGGTCGTATGGCTGGTCGAATTGAGCCTCCTCCCGCTATGGCTGGTAGCTTTGGTGCCATTTCTACCGCCAAGATCAGTGTAGAAGCTTCCCTGGCTGGAGCTATCATTGGGAAGGGTGGTGTGAACTCGAAGCAGATCTGTCGCCAAACAGGAGCCAAACTTTCAATTCGAGAGCACGAATCCGATCCAAATCTTAGAAACATTGAACTCGAGGGAACTTTTGAACAGATTAAGGAAGCAAGTAACATGGTAAAAGATTTACTTTTGACCGTGTCAATGTCTGCCCCACCAAAATCCACCCCAGGTGTTCCTGGTGCCCCTGCCCCCCCTGGAAGCAACTTCAAGACCAAGCTGTGTGAGAATTTTGCAAAAGGATCTTGCACCTTTGGAGAGAGATGTCACTTTGCACATGGAGCTGCTGAATTGCGCAAGTCGGGAGTATGA 888 0.4865 MDVRKRGRPDVNLNGAVKKTKQELESLSSGVGSKSKPCTKFFSTAGCPFGEGCHFLHYVPGGYNVVAHMMNLKPAAPPPRTVAAPPPIPNGSAPSAVKTRICNKFNTAEGCKFGDKCHFAHGEWELGKPIAPSIDDHHHHRPLGPPAGGRMAGRIEPPPAMAGSFGAISTAKISVEASLAGAIIGKGGVNSKQICRQTGAKLSIREHESDPNLRNIELEGTFEQIKEASNMVKDLLLTVSMSAPPKSTPGVPGAPAPPGSNFKTKLCENFAKGSCTFGERCHFAHGAAELRKSGV 295
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma02g01614 295 PANTHER TRANSCRIPTION FACTOR C3H FAMILY-RELATED 8 294 - -
Gma02g01614 295 SUPERFAMILY CCCH zinc finger 261 291 IPR036855 GO:0046872
Gma02g01614 295 SMART kh_6 167 237 IPR004087 GO:0003676
Gma02g01614 295 Gene3D - 91 128 - -
Gma02g01614 295 Gene3D - 260 293 - -
Gma02g01614 295 ProSiteProfiles Zinc finger C3H1-type profile. 261 288 IPR000571 GO:0046872
Gma02g01614 295 Pfam RNA-binding, Nab2-type zinc finger 37 57 - -
Gma02g01614 295 SMART c3hfinal6 96 123 IPR000571 GO:0046872
Gma02g01614 295 SMART c3hfinal6 261 287 IPR000571 GO:0046872
Gma02g01614 295 SMART c3hfinal6 32 59 IPR000571 GO:0046872
Gma02g01614 295 Pfam KH domain 171 233 IPR004088 GO:0003723
Gma02g01614 295 SUPERFAMILY CCCH zinc finger 95 127 IPR036855 GO:0046872
Gma02g01614 295 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 98 123 IPR000571 GO:0046872
Gma02g01614 295 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 262 286 IPR000571 GO:0046872
Gma02g01614 295 ProSiteProfiles Zinc finger C3H1-type profile. 96 124 IPR000571 GO:0046872
Gma02g01614 295 CDD KH-I 170 233 - -
Gma02g01614 295 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 158 238 IPR036612 GO:0003723
Gma02g01614 295 SUPERFAMILY CCCH zinc finger 33 58 IPR036855 GO:0046872
Gma02g01614 295 Gene3D K Homology domain, type 1 166 259 IPR036612 GO:0003723
Gma02g01614 295 PANTHER KH DOMAIN CONTAINING RNA BINDING PROTEIN 8 294 - -
Gma02g01614 295 ProSiteProfiles Zinc finger C3H1-type profile. 32 60 IPR000571 GO:0046872
Gma02g01614 295 ProSiteProfiles Type-1 KH domain profile. 168 232 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma02g01614 Gma-Chr2 32827038 32832703 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma02g01614 33 131 C3H Transcription Factor Family AT1G68200 26.263 1.88e-06 46.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Gma02g01614 KH_1 3.4e-12 CL0007
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma02g01614 - - gmx:100817463 587.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma02g01614 02 32827038 32832703 Gma02g01614 02 32827038 32832703 ECH
Gma19g01386 19 43156991 43171868 Gma02g01614 02 32827038 32832703 PCT
Gma03g01323 03 39428907 39432336 Gma02g01614 02 32827038 32832703 PCT
Gma02g01614 02 32827038 32832703 Gma19g01386 19 43156991 43171868 PCT
Gma02g01614 02 32827038 32832703 Gma03g01323 03 39428907 39432336 PCT