Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma02g01582 ATGGAACTGGCTTTGAGTTTGGGAGACACGTCCAAGTCTTTTACCTTTCTCGACAAGGCCGCGGTGAATTTACCCACCAACAAGGACCCACCTGGGTTGTTCAGCTTGGCGCCGAGTTTCGCCGCCACCGCCGCCGCCGCCGATAAAAGAAGCGATGCTGCTGAGAGGAGGGGTTTTTCTTCAGATCCACCGGTTCAGCTCGACCTTCTTCCTTTCTCTCCGGTTCTCAGACCCCAACAACAACCTCCCTCTCAACTTCGGATCCCTTGGCTCACCGAAGCATGCGGGGCGGCGAGGGTGCTAGACGTGAACCTATTCCGGGCGGCGACCGCGGAGGATGGCGACGACGGCACGTCGTTGTCGTCGTCGCCAAACAGCGCGGTGTCACCGTTTCAGATGGATTTCTGCACCAGGAACTGTAATGCAGAGTTCGGAGGCAGAAACAAGAGAGAGCAGCAAGAGGCTGAGGGTAGAGCGAGTGATGACGATGAAAATGGCTCCACGAGGAAGAAACTCAGGCTCTCTAAGGAACAATCAGCTTTTCTTGAAGAAAGTTTCAAAGAACACACCACTCTCAATCCCAAGCAAAAACTTGCTTTGGCAAAACAGTTAAATCTTCGTCCTCGTCAAGTGGAGGTTTGGTTTCAGAACAGAAGGGCAAGGACAAAGTTGAAGCAAACAGAAGTGGATTGTGAGTATTTGAAGAGATGCTGTGAGACCCTAACGGAAGAGAATAGAAGGTTGCAGAAGGAGCTTCAAGAACTCAGAGCCCTAAAAACTTCACAACCTTTCTACATGCAACTTCCAGCCACCACACTCACCATGTGTCCCTCTTGTGAAAGGGTTGCCACAAATTCCACCACAACTAACCAAACTACCACCGTTAACAACAATGCTTCTCAAATCCCAGTGGAATTGTCTCTCAGCAAGCCCAGAATATTGCCCTTCCCCAATGGACAGGCCCAAGCTCATCAAATAGCTTCTTCATGA 990 0.5081 MELALSLGDTSKSFTFLDKAAVNLPTNKDPPGLFSLAPSFAATAAAADKRSDAAERRGFSSDPPVQLDLLPFSPVLRPQQQPPSQLRIPWLTEACGAARVLDVNLFRAATAEDGDDGTSLSSSPNSAVSPFQMDFCTRNCNAEFGGRNKREQQEAEGRASDDDENGSTRKKLRLSKEQSAFLEESFKEHTTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLTEENRRLQKELQELRALKTSQPFYMQLPATTLTMCPSCERVATNSTTTNQTTTVNNNASQIPVELSLSKPRILPFPNGQAQAHQIASS 329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma02g01582 329 SMART halz 225 268 IPR003106 GO:0006355|GO:0043565
Gma02g01582 329 Gene3D - 173 223 - -
Gma02g01582 329 MobiDBLite consensus disorder prediction 146 173 - -
Gma02g01582 329 PANTHER - 2 301 - -
Gma02g01582 329 Coils Coil 231 261 - -
Gma02g01582 329 CDD homeodomain 169 226 IPR001356 GO:0003677
Gma02g01582 329 SUPERFAMILY Homeodomain-like 166 234 IPR009057 -
Gma02g01582 329 Pfam Homeodomain 169 223 IPR001356 GO:0003677
Gma02g01582 329 Pfam Homeobox associated leucine zipper 225 259 IPR003106 GO:0006355|GO:0043565
Gma02g01582 329 ProSiteProfiles 'Homeobox' domain profile. 165 225 IPR001356 GO:0003677
Gma02g01582 329 SMART HOX_1 167 229 IPR001356 GO:0003677
Gma02g01582 329 PANTHER HOMEOBOX ASSOCIATED LEUCINE ZIPPER PROTEIN 2 301 - -
Gma02g01582 329 ProSitePatterns 'Homeobox' domain signature. 200 223 IPR017970 GO:0000981|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma02g01582 Gma-Chr2 31994549 31997062 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma02g01582 146 318 Homeobox Transcription Factor Family AT4G37790 61.140 2.75e-70 218
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Gma02g01582 Homeodomain 2.5e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma02g01582 K09338 - gmx:100779138 583.563
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma02g01582 02 31994549 31997062 Gma02g01582 02 31994549 31997062 ECH
Gma19g01404 19 43308779 43310580 Gma02g01582 02 31994549 31997062 PCT
Gma03g01339 03 39559599 39561403 Gma02g01582 02 31994549 31997062 PCT
Gma02g01582 02 31994549 31997062 Gma19g01404 19 43308779 43310580 PCT
Gma02g01582 02 31994549 31997062 Gma03g01339 03 39559599 39561403 PCT