Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma02g01568 ATGGATCGTTCAAGAGTGTTTGTAGCTATTGTGGACATGAATAAGAGGCTTATGGGTCTGAGGTGCAACCAGAAGCAATTCTCGGTGCTCTCTGATCTGAGGACATGTGAGAAGCACTGTGGGGATCTCAAGTGGCAGTGCACGTGTGGAACCTCGTTTTCTAGAAAAGACAAGCTTATGGGTCATGTGGCTTTGTTCATGGGGCACCAACCAGTAGCAGCTATCAACAATAATAATGCTCTCTCTTACTCGGCCAAATTAGAGCAGCAGCACACATTGAAAATGCAGATTGAGGGTAGCTCAAGATGA 309 0.4595 MDRSRVFVAIVDMNKRLMGLRCNQKQFSVLSDLRTCEKHCGDLKWQCTCGTSFSRKDKLMGHVALFMGHQPVAAINNNNALSYSAKLEQQHTLKMQIEGSSR 102
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma02g01568 102 PANTHER PROTEIN SENSITIVE TO PROTON RHIZOTOXICITY 1 20 80 IPR044300 GO:0010044|GO:0010447
Gma02g01568 102 PANTHER OS08G0562300 PROTEIN 20 80 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma02g01568 Gma-Chr2 31402970 31403278 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma02g01568 15 72 C2H2 Transcription Factor Family AT5G22890 70.690 2.07e-24 92.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Gma02g01568 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma02g01568 - - gsj:114375424 159.458