Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma02g01562 ATGAGAACTTCGTGGGCGGATTCTGCTGACAACTCTGCCATTGGTTCTGGCATCACCAATGCCTCGGCTTGCCCTTCCCGGGGAGCTTATGTACCGCCACATCTTCGGAACCGGGCATTGTCGTCAGAGGTTCCTCTGGCGGCAGCGTCACACCCGGCGGTGGCTCTGGGGAATGACCGGGTTAATCATAGTGGTCCAGCTCCTCATCAGGGTGGTGGTTACTTTAAACCTGATCACGGGCGGCAGCAGCAGCAAGGATATGGTTCTGGTTTTCAGAGTGGTGGTGGCGGTGGCTGGAATGGTAGAGGGGTGGGGAGGGACCGTGGGAGGCGTGAGGCGAACCCTTTTGAGAATGTTGAAGCTGAGGATCAATCTTTTAGTGAGCAAGAGAATACGGGGATTAACTTTGAGGCATATGATGATATCCCTGTGGAGACTAGCGGGGAGAATGTGCCACTGCCCGTGAATTCATTCGCGGAAATAGATTTGGGTGTGGCATTGAATCAGAATATACAGAGATGCAAGTATGTGAAACCAACCCCGGTTCAGAGGTATGCCATTCCGATTTCTCTTGCGGGGCGAGACTTGATGGCCTGTGCTCAGACTGGGTCAGGAAAGACAGCTGCCTTTTGCTTCCCTATTATAAGTGGAATCATGAGGGAGCAATATGCTCAAAGGCCGCGTGTGGCTCGAACTGCTTATCCGCTGGCACTTATCCTCTCCCCTACAAGGGAGCTTTCATGTCAGATACATGATGAGGCCAAAAAGTTTTCTTATCAAACTGGTGTCAAAGTGGTGGTTGCTTATGGAGGAGCACCAATCACCCAACAGTTACGGGAGCTTGAGAGAGGCGTTGATATTCTGGTGGCAACTCCAGGACGATTGGTGGATTTGCTTGAGAGGGCTAGGTTGTCATTGCAGATGATAAGATACTTGGCTCTTGATGAGGCAGATCGGATGCTGGATATGGGTTTTGAGCCTCAAATAAGAAAGATAGTTGAACAAATGGACATGCCTCCTCCAGGCATGAGACAGACGCTGTTGTTTAGTGCCACATTTCCCAAAGAGATACAGGCTCTTGCATCAGATTTTCTTTCACGTTATGTGTTTCTGGCTGTTGGAAGGGTCGGTTCAAGTACTGATCTAATTGCTCAAAGAGTAGAATATGTGCTCGAGTCAGACAAGAGAAGCCACCTCATGGACCTTCTTCATGCTCAGAGGGAAACTGGAGTTAATGGCAAGCAAGGTCTGACATTAGTTTTTGTGGAAACGAAGAAAGGAGCTGATGCATTGGAACACTGCTTGTGTGTTAATGGATTTCCTGCAGCTAGCATTCATGGTGACAGAACACAACAAGAAAGAGAACTAGCATTGAGGTCATTCAAGACTGGAAACACACCAATTCTAGTGGCAACAGATGTTGCTGCACGTGGTCTTGACATCCCACGGGTAGCACATGTGGTAAATTTTGATCTTCCCAATGACATTGATGATTATGTGCACCGGATAGGAAGAACGGGGCGAGCTGGTAAAATGGGATTAGCAACGGCCTTCTTCAACGAAGGTAATTTCAACATGGCTAAACCATTAGCTGATCTGATGCAAGAAGCAAATCAAGAAGTACCTGCCTGGCTCAGCCGTTATGCGGCAAGGGCTACTTACAGTGGTGGCAACAGAAATAGGAAGTCGGGGGGATCCCGTTTTGGTGGCCGAGATTTTAGGAAAGAGGGCTCGTTTAATAAAGCAACAGATTACTATGGTGGCGGAACTGGTGGTGGATATTGTGGCAATTATGGTGGAGGGTATGGTCAAGGTGTGCCTAGTGCTTGGGATTAG 1836 0.4875 MRTSWADSADNSAIGSGITNASACPSRGAYVPPHLRNRALSSEVPLAAASHPAVALGNDRVNHSGPAPHQGGGYFKPDHGRQQQQGYGSGFQSGGGGGWNGRGVGRDRGRREANPFENVEAEDQSFSEQENTGINFEAYDDIPVETSGENVPLPVNSFAEIDLGVALNQNIQRCKYVKPTPVQRYAIPISLAGRDLMACAQTGSGKTAAFCFPIISGIMREQYAQRPRVARTAYPLALILSPTRELSCQIHDEAKKFSYQTGVKVVVAYGGAPITQQLRELERGVDILVATPGRLVDLLERARLSLQMIRYLALDEADRMLDMGFEPQIRKIVEQMDMPPPGMRQTLLFSATFPKEIQALASDFLSRYVFLAVGRVGSSTDLIAQRVEYVLESDKRSHLMDLLHAQRETGVNGKQGLTLVFVETKKGADALEHCLCVNGFPAASIHGDRTQQERELALRSFKTGNTPILVATDVAARGLDIPRVAHVVNFDLPNDIDDYVHRIGRTGRAGKMGLATAFFNEGNFNMAKPLADLMQEANQEVPAWLSRYAARATYSGGNRNRKSGGSRFGGRDFRKEGSFNKATDYYGGGTGGGYCGNYGGGYGQGVPSAWD 611
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma02g01562 611 CDD DEADc_DDX3_DDX4 157 377 IPR044763 GO:0003724|GO:0005524
Gma02g01562 611 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 42 583 - -
Gma02g01562 611 MobiDBLite consensus disorder prediction 57 128 - -
Gma02g01562 611 Pfam Helicase conserved C-terminal domain 395 510 IPR001650 -
Gma02g01562 611 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 52B-RELATED 42 583 - -
Gma02g01562 611 MobiDBLite consensus disorder prediction 104 118 - -
Gma02g01562 611 Gene3D - 112 373 IPR027417 -
Gma02g01562 611 CDD SF2_C_DEAD 383 519 - -
Gma02g01562 611 SMART helicmild6 429 510 IPR001650 -
Gma02g01562 611 MobiDBLite consensus disorder prediction 1 23 - -
Gma02g01562 611 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 156 184 IPR014014 GO:0003724
Gma02g01562 611 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 398 549 IPR001650 -
Gma02g01562 611 SMART ultradead3 175 386 IPR014001 -
Gma02g01562 611 Gene3D - 374 554 IPR027417 -
Gma02g01562 611 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 236 527 IPR027417 -
Gma02g01562 611 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 187 371 IPR014001 -
Gma02g01562 611 MobiDBLite consensus disorder prediction 1 27 - -
Gma02g01562 611 Pfam DEAD/DEAH box helicase 180 359 IPR011545 GO:0003676|GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma02g01562 Gma-Chr2 31235317 31248693 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma02g01562 154 542 Eukaryotic Initiation Factors Gene Family AT3G19760 30.848 1.36e-59 202
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma02g01562 K11594 - gmx:100800039 1114.75
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma02g01562 02 31235317 31248693 Gma02g01562 02 31235317 31248693 ECH