Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma02g01554 ATGTCGGTTTTACCAAGCATGGAGCTTCCTACAACTGATGTGGACCTTGAGCCTAAGAAGATTGAACCTGAGAAAAACGAAGGTCCCTTGTTCCATTGTGATTTTTGTGATACAGAAGTAGTTCACAAGCTGGCTCAAATGTTCCTGCCAGGACTAGCCTGTGCCTGTGTTGATAACACCACAGGCGGTCCCTTCAAGACCCCTGGTTCAGTGGCTGTTGATCTGAGAAAGGAAATGATAGAATTTGTCACCCAAAAGAGCGAATCGTTTGTTGCTGAGTCTGTTATCTTAGAGGGTGGTCCTGATGGCGGAGCATTGGAACACCCTTTTGATATCATTTGCTATTTTGTTGATGAGTTTGTTAGTTCAAAGAGGAATTTGTTGAGCCAGGTTTCGGGGTGGCTGCTGAGTGATAAGAGAGAGGACAAAATAGACGATTTTGTTCAGGAGATGGAAATGAATGGTTTTTGGCCGCTGGATAGAAGAGAAACACTTGCAAAAACTTTGATCAAGAATGTTGACGTGAAGAGCTCGTTTCATTGCAGCATGAGTTTTAAATCGGCACGAGATCTTGCCAACCATGCTGACGATGGTTGCAACTTCAGGCCTGTGATCTGCCGAAATGAAGGGTGCGACGCCAGATTCAGTGCTGGTCATTTGAAGGAGCATGATTCAGCTTGTGATTTCAAGATAGTTCCATGTGAACAGAAGTGCACAGATAGCATTTTGAGACGCGAGATGGATAGGCACTGCATAACTGTTTGCCCAATGAAGCTTGTGAATTGCCCTTTCTATGCAGTGGGTTGTAGATCTGCTATTGCACAAAGTATGATTAGAAAACATTGTTCAGATGACATCGAGTCTCACCTGTTGCTCATGCTTAAAGGCATCCACCAGGAGGCATCAGGCGAAGATCTAAAACGACGTGTGGAGCAAATTTTACAGGCGTCATCAAGAAGCAAATTAGCAGAGGCTCGGGATGTGAGATCTTATAAAAATATTGTCAAGGACCTTGAAGTTAAGCTAGGGCCTCTTGAAGTGATTGCCAAAGAGAAAACTAGTGCAGAAACTGTTGCCGAGAATGAAGATAGTGAAGACAATAGAACCAAAACAAAAGACAAGGAGCAGCACACACAAACTTTGAATTCATTGGATAAAGCTGAAGTGAGTGCCATCTTGGAAAAGACTTGTGCAGGGAATGCTGTCAATAAAGTGGATAGTGAACATAAGGAAAATGGAAAGCAAGGGTAG 1251 0.4349 MSVLPSMELPTTDVDLEPKKIEPEKNEGPLFHCDFCDTEVVHKLAQMFLPGLACACVDNTTGGPFKTPGSVAVDLRKEMIEFVTQKSESFVAESVILEGGPDGGALEHPFDIICYFVDEFVSSKRNLLSQVSGWLLSDKREDKIDDFVQEMEMNGFWPLDRRETLAKTLIKNVDVKSSFHCSMSFKSARDLANHADDGCNFRPVICRNEGCDARFSAGHLKEHDSACDFKIVPCEQKCTDSILRREMDRHCITVCPMKLVNCPFYAVGCRSAIAQSMIRKHCSDDIESHLLLMLKGIHQEASGEDLKRRVEQILQASSRSKLAEARDVRSYKNIVKDLEVKLGPLEVIAKEKTSAETVAENEDSEDNRTKTKDKEQHTQTLNSLDKAEVSAILEKTCAGNAVNKVDSEHKENGKQG 416
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma02g01554 416 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 226 287 IPR013083 -
Gma02g01554 416 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 172 225 IPR013083 -
Gma02g01554 416 ProSiteProfiles Zinc finger TRAF-type profile. 223 270 IPR001293 GO:0008270
Gma02g01554 416 PANTHER NEUROFILAMENT HEAVY POLYPEPTIDE-LIKE 4 368 - -
Gma02g01554 416 PANTHER TNF RECEPTOR ASSOCIATED FACTOR 4 368 IPR043211 -
Gma02g01554 416 MobiDBLite consensus disorder prediction 354 381 - -
Gma02g01554 416 SUPERFAMILY TRAF domain-like 204 284 - -
Gma02g01554 416 Pfam TRAF-type zinc finger 223 281 IPR001293 GO:0008270
Gma02g01554 416 MobiDBLite consensus disorder prediction 354 385 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma02g01554 Gma-Chr2 31031601 31034668 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Gma02g01554 zf-TRAF 2.2e-10 CL0389
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma02g01554 - - gmx:100802183 846.269
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma02g01554 02 31031601 31034668 Gma02g01554 02 31031601 31034668 ECH
Gma19g01941 19 48552265 48556472 Gma02g01554 02 31031601 31034668 PCT
Gma03g01900 03 44907490 44912657 Gma02g01554 02 31031601 31034668 PCT
Gma02g01554 02 31031601 31034668 Gma19g01941 19 48552265 48556472 PCT
Gma02g01554 02 31031601 31034668 Gma03g01900 03 44907490 44912657 PCT