Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma02g01508 ATGGCGCAGAGTAATTGGGAAGCAGATAAGATGCTTGATGTTTATATTTATGATTATTTGGTGAAGAAAAAGTTGCATAACACTGCTAAAGCATTCATGACAGAAGGGAAGGTTTCTCCTGATCCAGTAGCAATTGATGCTCCTGGAGGTTTTCTTTTTGAGTGGTGGTCTGTTTTCTGGGATATTTTTATTGCGAGGACAAATGAGAAACATTCTGAGACTGCTGCTGCATATTTAGAGGCACAACAGATTAAAGCAAAAGAACAACAGCAACTGCAAATGCAGCAGTTGCAATTAATGCGTCAAGCTCAAATGCAAAGGAGGGATTCTAATCATCCTCCCCTTGGAGGTCCTGTAAATGCTATCACTGCAGAAGGAGTGCTTGGGCAATCTACTGCCAGTGCTTTGGCTGCAAAAATGTATGAGGAGAGGATGAAGCACTCCAACCCCATGGATACAGAGACATCCCAACCACTTTTAGATGCTAGAATGGCTCTTTTGAAATCAACAAATCATCCTGGTCAGATGGTTCAAGGAAATTCAGGAAGTGTGACGGCAACTTTGCAGCAAATCCAGGCTCGAACTCAGCAAACACCTGATATCAAACCTGAAGTCAACATGGGTACCATGCAGAGATCCTTGCCTATGGATCCTTCATCAATTTACGGGCAGGGAGGAATGCAGTCAAAGCCTGGAATTGCAAATGCAGGATTGAATCCGGGAGTTGGTAGTCTCACATTGAAAGGATGGCCTCTAACTGGCATTGATCAAATTCGTCCTGGTTTTGGAGCACCAGTTCAGAAGCCTCTCCTTCAGAGTGCAAATCAGTTTCAGCTTTTGCCGCAGCAACAACAACAACAGATCCTTGCACAGGTTCGGGCACAAGGAAATATTGGCAATTCACCTGCTTATGGAGATATGGATCCACAACGATTAAGGGGATTAGCTAGGGGAAGTTTGAATGCTAAAGACGGTCTATCAATTGCAAATGATGGATCAATAGGCTCTCCAATTCAATCTACTTCATCTAAGATCAACATGGCACAGATCCAACAATCCACTTCCCAGCAACAACAAGATCCTTTGCATCCACAACAATTGGTGCAGAATAACCGGAAAAGGAAGGGGCCTACATCTTCAGGACCTGCCAACAGTACTGGTACCGGAAATACACTTGGCCCTTCTAATTCTCAGCCATCAACTCCATCCACTCATACTCCCGGTGATGGAGTTGCTATGACGGGTAACTTGCAGAATGTAGCTGGTATATCCAAAGGTTTGATCATGTATGGTACTGATGGAGTGGGCTGTCTTGCATCTTCAACAAATCAGCTGTTGCAGGATGACATGGAACATTTTGGAGATGTTGGCTCCTTAGAGGACAATGTGGAATCATTTCTCTCACAGGATGATGGTGATGGAAGGGACTTGTTTGGCACGTTGAAACGGAACCCTTCTGAGCATGCTACAGATGCTTCAAAAGGCTTTTCCTTTGATGAAGTTGGTTCTATACGCAAAAGCAACAGCAAAGTTGTTTGCTGTCATTTCTCTTCAGATGGGAAATTATTAGCTAGTGCTGGACATGACAAGAAGGTTGTTCTGTGGAACATGGAGACATTGCAAACAGAAAGCACTCCGGAGGAACACAGTCTTATTATTACTGATGTTCGCTTCAGACCAAATTCAACTCAGCTGGCAACATCTTCGTTTGATACAACTGTGCGGCTGTGGGATGCTGCAGATCCAACCTTCCCTTTACATACATATAGTGGTCATACTTCACATGTGGTGTCCCTTGATTTCCACCCAAAGAAAACTGAGCTTTTCTGTTCTTGTGACAATAACAATGAGATTCGCTTCTGGAGTATTAGTCAATATTCTTCCACACGTATTTTTAAGGGAGGATCTACACAGGTGAGGTTTCAGCCAAGGCTTGGTCACCTTCTGGCTGCAGCAAGTGGCAGTGTTGTGTCTCTCTTTGATGTTGAGACTGACAGGCAGATACACACATTACAGGGACATTCTGCAGAGGTACGCTGTGTCTGTTGGGATACAAATGGAGATTACTTGGCATCTGTGAGTCAAGAATCTGTCAAAGTGTGGTCACTTGCCTCTGGGGAATGCATTCATGAACTTACTTCCAGTGGAAACATGTTCCATTCTTGTGTTTTTCACCCAAGCTACTCCACTCTCTTGGTTATCGGAGGATACCAGTCATTGGAATTATGGAACATGGCTGAGAATAAATGTATGACAGTGTCAGCAGCTCACGAGTGTGTGATATCTGCTCTAGCACATTCACCCGTGACAAGGATGGTTGCTTCTGCCAcagtggcaaacgagatggacgaaaatcagtggatgtatgaaagtataatgtctaaagaagtggatatgaattatcaaaatgaagaagaatgtggtgcgaatgaaccacgtgttggttgttccattgcgctcaatacttctcaggtgtttgacaaccgagaggatgttttgcggtgggctcgatccgttcttcatgaaaacggatttgtggtggtgattataaggaaacacaacaacaaacaggattga 2577 0.3985 MAQSNWEADKMLDVYIYDYLVKKKLHNTAKAFMTEGKVSPDPVAIDAPGGFLFEWWSVFWDIFIARTNEKHSETAAAYLEAQQIKAKEQQQLQMQQLQLMRQAQMQRRDSNHPPLGGPVNAITAEGVLGQSTASALAAKMYEERMKHSNPMDTETSQPLLDARMALLKSTNHPGQMVQGNSGSVTATLQQIQARTQQTPDIKPEVNMGTMQRSLPMDPSSIYGQGGMQSKPGIANAGLNPGVGSLTLKGWPLTGIDQIRPGFGAPVQKPLLQSANQFQLLPQQQQQQILAQVRAQGNIGNSPAYGDMDPQRLRGLARGSLNAKDGLSIANDGSIGSPIQSTSSKINMAQIQQSTSQQQQDPLHPQQLVQNNRKRKGPTSSGPANSTGTGNTLGPSNSQPSTPSTHTPGDGVAMTGNLQNVAGISKGLIMYGTDGVGCLASSTNQLLQDDMEHFGDVGSLEDNVESFLSQDDGDGRDLFGTLKRNPSEHATDASKGFSFDEVGSIRKSNSKVVCCHFSSDGKLLASAGHDKKVVLWNMETLQTESTPEEHSLIITDVRFRPNSTQLATSSFDTTVRLWDAADPTFPLHTYSGHTSHVVSLDFHPKKTELFCSCDNNNEIRFWSISQYSSTRIFKGGSTQVRFQPRLGHLLAAASGSVVSLFDVETDRQIHTLQGHSAEVRCVCWDTNGDYLASVSQESVKVWSLASGECIHELTSSGNMFHSCVFHPSYSTLLVIGGYQSLELWNMAENKCMTVSAAHECVISALAHSPVTRMVASATVANEMDENQWMYESIMSKEVDMNYQNEEECGANEPRVGCSIALNTSQVFDNREDVLRWARSVLHENGFVVVIIRKHNNKQD 858
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma02g01508 858 ProSiteProfiles Trp-Asp (WD) repeats profile. 546 578 IPR001680 GO:0005515
Gma02g01508 858 ProSiteProfiles Trp-Asp (WD) repeats profile. 504 545 IPR001680 GO:0005515
Gma02g01508 858 SMART WD40_4 664 702 IPR001680 GO:0005515
Gma02g01508 858 SMART WD40_4 497 536 IPR001680 GO:0005515
Gma02g01508 858 SMART WD40_4 705 744 IPR001680 GO:0005515
Gma02g01508 858 SMART WD40_4 625 661 IPR001680 GO:0005515
Gma02g01508 858 SMART WD40_4 539 578 IPR001680 GO:0005515
Gma02g01508 858 SMART WD40_4 582 622 IPR001680 GO:0005515
Gma02g01508 858 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 504 539 - -
Gma02g01508 858 MobiDBLite consensus disorder prediction 332 413 - -
Gma02g01508 858 PANTHER TRANSCRIPTIONAL REGULATOR OF FILAMENTOUS GROWTH FLO8 1 777 IPR044716 GO:0003714
Gma02g01508 858 ProSiteProfiles Trp-Asp (WD) repeats profile. 589 631 IPR001680 GO:0005515
Gma02g01508 858 Gene3D - 634 782 IPR015943 GO:0005515
Gma02g01508 858 SUPERFAMILY WD40 repeat-like 499 777 IPR036322 GO:0005515
Gma02g01508 858 CDD WD40 500 776 - -
Gma02g01508 858 PANTHER TRANSCRIPTIONAL COREPRESSOR LEUNIG_HOMOLOG 1 777 - -
Gma02g01508 858 ProSiteProfiles Trp-Asp (WD) repeats profile. 671 711 IPR001680 GO:0005515
Gma02g01508 858 ProSitePatterns Trp-Asp (WD) repeats signature. 523 537 IPR019775 -
Gma02g01508 858 Coils Coil 87 107 - -
Gma02g01508 858 Gene3D - 484 633 IPR015943 GO:0005515
Gma02g01508 858 SMART Lish 8 40 IPR006594 GO:0005515
Gma02g01508 858 MobiDBLite consensus disorder prediction 326 413 - -
Gma02g01508 858 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 546 578 - -
Gma02g01508 858 Pfam LisH 10 36 IPR006594 GO:0005515
Gma02g01508 858 Pfam WD domain, G-beta repeat 509 536 IPR001680 GO:0005515
Gma02g01508 858 Pfam WD domain, G-beta repeat 667 702 IPR001680 GO:0005515
Gma02g01508 858 Pfam WD domain, G-beta repeat 545 578 IPR001680 GO:0005515
Gma02g01508 858 Pfam WD domain, G-beta repeat 585 622 IPR001680 GO:0005515
Gma02g01508 858 ProSiteProfiles LIS1 homology (LisH) motif profile. 8 40 IPR006594 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma02g01508 Gma-Chr2 28918480 28946356 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma02g01508 504 745 U-box Gene Family AT2G33340 26.848 4.12e-15 77.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR LUG Gma02g01508 WD40 0.00017 CL0186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma02g01508 - - gmx:100790180 1476.84