Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma02g01475 ATGAAGCATGCGGTGCCAGCTAAGCTTCTCACTCACTCACCATTCACCATTGTCCTTTGCATCGCTCTAAGCAACACGTCCTTTTCTTCACATATTCCAGTGTGCTGTTCTGAGATTCGGAGAGATGGGTTTGGAAGAAGCTTCCAGAAACTGTATATAAGTCATCATGCTGTTGTGACAGTTAAAGTTTGGCTGGGACGGCGAGATGCGGTTTGTCCTAGCTGTAACGAGGGATTTGTTCATGAACTTAATGATATGGTGCATGTTAATCCTTTTGACTTATTTGAAATGGACAACAATGAAGAACGAGATCAAAGGCTTGGACTCATGGAAACATTCTCTGCCTTTATGAGGCATCAAATGGCAGATAGGGGCAGAAGCCATGACATCAGGGCGCAAACAGATTCAAATCCTGAACACAGTGCAGGGTTTGCTCCTCTGTTGATCTTTGGTGGCCAAATACCTTTTAGATTGTCTGGACATGGTGGCTTTGAAGCTCTCTTTAACGGGGCACCAGGAATTGGTCTAACACGAGGTAACACAGGCGATTATTTTATTGGTCCTGGACTAGAAGAACTGTTTGAACAGCTTTCAGCTAATAACAGGCAAGGTCCCCCGCCAGCATCAAGATCATCAATCGATGCAATGCCTACCATTAAGATCACGCAGAGGCATCTTCGATCAGATTCACATTGTCCAGTGTGCAAAGATAAATTTGAAGTGGGGTCTGAAGCAAGACAAATGCCATGCAACCATTTATATCACTCGGATTGTATTGTTCCATGGTTGGTCCAGCATAACTCCTGCCCCGTTTGTCGTCAGGAACTGCTGCCACAAGGATTGAGTAGTAGTAACCGCAGCACAAATGGTAGAAGTAGAAGTGCAAGTTTAAGTAGTAGTGGTAGGGAGAGCCATGGAAGGAGAAATCCATTTTCCTTTTTGTGGCCTTTTCGTTCTTCTCATTCTAGCAGTAATGATGAAGCAACAGGAAGCAGCTCACCGACACCAACTATCCCTGAGAACAGCCATCATCATCATGCAGGGTATTCTGGGTGGCCATTTGAATGA 1068 0.4485 MKHAVPAKLLTHSPFTIVLCIALSNTSFSSHIPVCCSEIRRDGFGRSFQKLYISHHAVVTVKVWLGRRDAVCPSCNEGFVHELNDMVHVNPFDLFEMDNNEERDQRLGLMETFSAFMRHQMADRGRSHDIRAQTDSNPEHSAGFAPLLIFGGQIPFRLSGHGGFEALFNGAPGIGLTRGNTGDYFIGPGLEELFEQLSANNRQGPPPASRSSIDAMPTIKITQRHLRSDSHCPVCKDKFEVGSEARQMPCNHLYHSDCIVPWLVQHNSCPVCRQELLPQGLSSSNRSTNGRSRSASLSSSGRESHGRRNPFSFLWPFRSSHSSSNDEATGSSSPTPTIPENSHHHHAGYSGWPFE 355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma02g01475 355 ProSiteProfiles Zinc finger RING-type profile. 232 273 IPR001841 -
Gma02g01475 355 MobiDBLite consensus disorder prediction 319 340 - -
Gma02g01475 355 SMART ring_2 232 272 IPR001841 -
Gma02g01475 355 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RHC1A-RELATED 61 339 - -
Gma02g01475 355 SUPERFAMILY RING/U-box 212 279 - -
Gma02g01475 355 MobiDBLite consensus disorder prediction 280 307 - -
Gma02g01475 355 MobiDBLite consensus disorder prediction 319 355 - -
Gma02g01475 355 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 61 339 - -
Gma02g01475 355 CDD RING-H2_RNF126_like 232 273 - -
Gma02g01475 355 MobiDBLite consensus disorder prediction 280 306 - -
Gma02g01475 355 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 194 278 IPR013083 -
Gma02g01475 355 Pfam Ring finger domain 231 273 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma02g01475 Gma-Chr2 24409664 24412053 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma02g01475 191 318 C3H Transcription Factor Family AT1G68180 41.406 8.95e-26 102
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma02g01475 K11982 - gmx:100787523 594.349
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma02g01475 02 24409664 24412053 Gma02g01475 02 24409664 24412053 ECH