Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma02g01433 ATGGCACCAAGGAGTGAAGCTCCAAGTCAGGTTCCTCCTCCTGTTCCTGAAGCAACAGTTGGAGCTATTGGTGTCTCACTTCCTGGCCCGAGGGAACATGTACTTCAGTGCTTCATTAGGCGCAACAATGCCTCACAGACATATTATATGTTTCTCAGTTTATCTAGTGCACTAGTAGCTGATGATGGCAAGTTCCTTCTGGCTGCACGCAAGTTCAGACGCCCTACCTGCACAGATTATATTATCTTCGTTGATGCAGATGATATGTCCAGAGAAAGCAATGCCTCTGTTGGGAAATTGAGATTGCTATTTTTGGGAACCAAGTTTACAATCTACGATAGAAAAAGTTGTTCCACTGAGCTGGTGAAAATGGACATGCTGGACTGCAAGAGGATGAAGTCATCCTCCAATTTGGAAAAATTGGGAAGGACTTGTTTACAATGGATTACCAGTACCCTATCTCATCATTTCAAGCATTTGCAATCTGCCTCAACAGCTTCGCTACCACGGTTGCTTGCGAATGATGCATGTTTGAACATGTCACATCATCGTACGAAAACATTCTTCATCATATGGAGAACATATCAATTGGTAATTTCGTCTTCACAACTCGAGAGAGTGGAAACTACTTAG 633 0.4313 MAPRSEAPSQVPPPVPEATVGAIGVSLPGPREHVLQCFIRRNNASQTYYMFLSLSSALVADDGKFLLAARKFRRPTCTDYIIFVDADDMSRESNASVGKLRLLFLGTKFTIYDRKSCSTELVKMDMLDCKRMKSSSNLEKLGRTCLQWITSTLSHHFKHLQSASTASLPRLLANDACLNMSHHRTKTFFIIWRTYQLVISSSQLERVETT 210
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma02g01433 210 Pfam Tub family 28 123 IPR000007 -
Gma02g01433 210 PRINTS Tubby superfamily signature 80 96 IPR000007 -
Gma02g01433 210 PRINTS Tubby superfamily signature 96 120 IPR000007 -
Gma02g01433 210 Gene3D Tubby Protein; Chain A 23 163 IPR025659 -
Gma02g01433 210 SUPERFAMILY Tubby C-terminal domain-like 26 120 IPR025659 -
Gma02g01433 210 PANTHER TUBBY-RELATED 22 122 - -
Gma02g01433 210 PANTHER TUBBY-LIKE F-BOX PROTEIN 9 22 122 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma02g01433 Gma-Chr2 17216321 17222570 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma02g01433 23 113 TUB Transcription Factor Family AT2G47900 60.870 1.70e-34 124
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Gma02g01433 Tub 5.9e-29 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma02g01433 K19600 - gmx:100805161 179.874