Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma02g01398 ATGGACTTGTACGGTCGGGCCCCCGCCAGAAATGGATCCAACCCGCTGAACCAGCCCGAATGGGGCACCGACACTGCTCTCGAAGAATCGATGTGGCATTTGACGCTGGGTGGTGTCGAATCTTACCCGGAGCGACCCGGCGTGCCGAATTGTGTGTATTACATGCGGACTGGTGTGTGTGGATATGGTGACAGGTGTCGTTTCAATCACCCTCGCGATCGTGCTGCGGTTGCTGCGGCAGTAAGAGCTACAGGGGACTACCCAGAAAGGGTGGGGGAACCTCCGTGTCAGTATTATTTAAAGACCGGAACCTGTAAATTTGGTGCATCTTGTAAATTCCACCATCCAAAAAATGGAGGTGGATATTTAAGCCAAGCTCCACTAAATATTTATGGATACCCGTTACGGCTGGGTGAGAAAGAGTGCTCCTACTATTTGAAAACGGGGCAGTGCAAATTTGGTATATCTTGTAAATTCCATCATCCTCAACCTGCTGGCACATCATTGCCAACTTCTGCACCTCAATTTTATCAACAGGTGCAGTCTCCTACAGTTCCTCTTCCTGAACAGTATGGAGGAGCTTCCACAAGCTTGAGAGTGGCCAGGCCTCCTGTATTGCCTGGTTCATATGTACAAGGGGCGTATGGTCCTGTACTTCTTTCTCCAGGGGTTGTCCAATTTCCTGGATGGAGTCATTATTCGGCACCTGTAAGTCCTGTGCTATCTCCTGGCACTCAACCTGCTGTTGGGGCCACTTCTTTATACGGAGTGACCCAGTTGTCATTGCCAACATCAGCTTTTGCTAGACCATATACTCCTCTGTCCTCTACTACCGGCCCTTCAGGAAGCAGCCTGAAGGATCGATTTTTTCCTGAAAGACCCGGTGAACCCGAATGCCAATACTATCTGAGAACAGGGGACTGTAAATTTGGATTAGCTTGTCGATATCATCATCCTCGGGACCATATTGTGGCACCGCTTCTTAGCCCCGTTGGACTTCCTTTACGTCCGGTGCACTAG 1020 0.5 MDLYGRAPARNGSNPLNQPEWGTDTALEESMWHLTLGGVESYPERPGVPNCVYYMRTGVCGYGDRCRFNHPRDRAAVAAAVRATGDYPERVGEPPCQYYLKTGTCKFGASCKFHHPKNGGGYLSQAPLNIYGYPLRLGEKECSYYLKTGQCKFGISCKFHHPQPAGTSLPTSAPQFYQQVQSPTVPLPEQYGGASTSLRVARPPVLPGSYVQGAYGPVLLSPGVVQFPGWSHYSAPVSPVLSPGTQPAVGATSLYGVTQLSLPTSAFARPYTPLSSTTGPSGSSLKDRFFPERPGEPECQYYLRTGDCKFGLACRYHHPRDHIVAPLLSPVGLPLRPVH 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma02g01398 339 ProSiteProfiles Zinc finger C3H1-type profile. 90 118 IPR000571 GO:0046872
Gma02g01398 339 SUPERFAMILY CCCH zinc finger 297 321 IPR036855 GO:0046872
Gma02g01398 339 PANTHER PROTEIN PHOSPHATASE RELATED 1 337 - -
Gma02g01398 339 SUPERFAMILY CCCH zinc finger 93 118 IPR036855 GO:0046872
Gma02g01398 339 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 32 1 337 - -
Gma02g01398 339 ProSiteProfiles Zinc finger C3H1-type profile. 293 321 IPR000571 GO:0046872
Gma02g01398 339 SUPERFAMILY CCCH zinc finger 137 164 IPR036855 GO:0046872
Gma02g01398 339 SUPERFAMILY CCCH zinc finger 49 74 IPR036855 GO:0046872
Gma02g01398 339 Gene3D - 44 120 - -
Gma02g01398 339 Gene3D - 277 326 - -
Gma02g01398 339 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 93 117 IPR000571 GO:0046872
Gma02g01398 339 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 47 72 IPR000571 GO:0046872
Gma02g01398 339 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 295 320 IPR000571 GO:0046872
Gma02g01398 339 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 139 163 IPR000571 GO:0046872
Gma02g01398 339 Gene3D - 124 171 - -
Gma02g01398 339 MobiDBLite consensus disorder prediction 1 22 - -
Gma02g01398 339 SMART c3hfinal6 90 117 IPR000571 GO:0046872
Gma02g01398 339 SMART c3hfinal6 136 163 IPR000571 GO:0046872
Gma02g01398 339 SMART c3hfinal6 293 320 IPR000571 GO:0046872
Gma02g01398 339 SMART c3hfinal6 45 72 IPR000571 GO:0046872
Gma02g01398 339 ProSiteProfiles Zinc finger C3H1-type profile. 136 164 IPR000571 GO:0046872
Gma02g01398 339 ProSiteProfiles Zinc finger C3H1-type profile. 45 73 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma02g01398 Gma-Chr2 16160417 16163016 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma02g01398 1 337 C2H2 Transcription Factor Family AT5G18550 50.693 2.12e-111 330
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Gma02g01398 zf-CCCH 7.2e-09 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma02g01398 - - gmx:100814096 701.819