Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma02g01392 ATGATGAATGGTTCTCCAAATTCAAAACAGAGAACATGTGACTATTGCGGGAGCTTCACGGCTCTTCTGTACTGCAGAGCCGATTCTGCGAAGCTTTGTTTCTTCTGTGACCGTAAAGTTCACTTCCCAAACCAGCTTTTCTCGAAGCACAAGCGCGCGCAGCTCTGTGATGCGTGTGGAGATTCCCCTGCCTCGGTGCTCTGTTCTGCAGAAAACTCTGTTCTGTGCCAAAACTGTGATTGCGGAAAGCAAAAACATTTGGCGTCTGAGGCGCACCAACGGAGGCCACTCGAGGGGTTCTCGGGGTGCCCTTCTGTGACTGAGTTGTTAACAATTCTGGGTCTCAGTGAAAAATCTCTGCTTTCAAATGAGGGAACTTCCCAGATTGATGATGACCTTTCGGATTTGCACGTGTGGAGTGCTCCTTCTATTAATGGTCTTGAAGATTTGATCACTACCACAGCTTCTTCTCAAAAGAAACGTAAGGGTGCGTGCGGGAGACACAAAGAAGAGATTCTTAGTCAACTCCGTGAGCTAATAAAGTTGGAGCCCGACTTGATTCATGCTGAACGACAAGGGCAATTTGGAAATTTGCCTACTGATTTTGAACGAGACGTGGAGGCTAATATATTTCCTTCATATGAGGTAGGTGTGTTTTGTTGGCATGGAGAAAGCAGTGATCCTAGAAATCAAATTGTTCCTTCCGATACGTCACCATTGAGAGATTATGGCGATATAGTTTCAGCTGAAGATGGAAGTTTTACGATCACTGTGACTCACGCCAATTTTAACAACCAAGGGAAACCATCAAATTCTTTTAACGCTGAAAACTTATCTCCTACTCCTAAAGCTACTCCATACGAGTTGACAAGTCATGAAAGAGATTCAGCATTATTGCGATACAGAGAGAAGAAAAAATCCAGAAGATATGACAAGCACATCAGATATGAATCACGAAAAGTTCGGGCAGAAAGCAGGATGAGAATTAAGGGTAGGTTTGTCAGAGATGAAACACAAAAATAA 1023 0.4379 MMNGSPNSKQRTCDYCGSFTALLYCRADSAKLCFFCDRKVHFPNQLFSKHKRAQLCDACGDSPASVLCSAENSVLCQNCDCGKQKHLASEAHQRRPLEGFSGCPSVTELLTILGLSEKSLLSNEGTSQIDDDLSDLHVWSAPSINGLEDLITTTASSQKKRKGACGRHKEEILSQLRELIKLEPDLIHAERQGQFGNLPTDFERDVEANIFPSYEVGVFCWHGESSDPRNQIVPSDTSPLRDYGDIVSAEDGSFTITVTHANFNNQGKPSNSFNAENLSPTPKATPYELTSHERDSALLRYREKKKSRRYDKHIRYESRKVRAESRMRIKGRFVRDETQK 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma02g01392 340 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 8 337 - -
Gma02g01392 340 SMART bboxneu5 56 97 IPR000315 GO:0008270
Gma02g01392 340 SMART bboxneu5 8 55 IPR000315 GO:0008270
Gma02g01392 340 MobiDBLite consensus disorder prediction 266 289 - -
Gma02g01392 340 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 13 8 337 - -
Gma02g01392 340 MobiDBLite consensus disorder prediction 266 286 - -
Gma02g01392 340 ProSiteProfiles CCT domain profile. 294 336 IPR010402 GO:0005515
Gma02g01392 340 ProSiteProfiles Zinc finger B-box type profile. 51 97 IPR000315 GO:0008270
Gma02g01392 340 Pfam CCT motif 294 336 IPR010402 GO:0005515
Gma02g01392 340 CDD Bbox1_BBX-like 13 55 - -
Gma02g01392 340 ProSiteProfiles Zinc finger B-box type profile. 8 55 IPR000315 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma02g01392 Gma-Chr2 16088863 16091850 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma02g01392 9 309 C2C2-CO-like Transcription Factor Family AT2G47890 36.624 1.39e-53 176
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Gma02g01392 CCT 2e-15 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma02g01392 - - gmx:100796874 699.123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma02g01392 02 16088863 16091850 Gma02g01392 02 16088863 16091850 ECH
Gma10g00207 10 1889480 1891888 Gma02g01392 02 16088863 16091850 GST
Gma19g01970 19 48783459 48788096 Gma02g01392 02 16088863 16091850 PCT
Gma03g01928 03 45154402 45158088 Gma02g01392 02 16088863 16091850 PCT
Gma02g01392 02 16088863 16091850 Gma19g01970 19 48783459 48788096 PCT
Gma02g01392 02 16088863 16091850 Gma03g01928 03 45154402 45158088 PCT