Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma02g01390 ATGTCGTTTAGGAGTATCATCCTTGAAAGGAAGGGATTTGAGGTGAAGTTTGGATATAGCATGAGATCCAGGTCACAGTCACACAGTGATGCTATTGCCCAGGATAGTTTGGTGGTGCTTGATGGATTGAAGCAGAGTTGTTGGGCTAACATGCCCCCTGAGCTTTTGAGGGATGTGCTCATGAGAATTGAGGCCTCTGAGGATTCCTGGCCTGCCCAGAAACATGTCGTCGCCTGCGCCGGAGTTTGCCGCAGTTGGAGAGAAATCATGAAGGAAATTGTCAAGTCCCCTCAACTATCCGGCAAGCTGACATTCCCAATTTCCTTGAAGCAGCCTGGTCCAAGGGACTCTCTTCTTCAATGCTATATTAAACGAAATCGCAGTAATCAAACATATTATCTGTTTCTTGGTTTAAACCAAGCCTCAACTGATGAAGGCAAGTTCCTTCTTTCTGCACGCAAGTGCCGACGTGCAACTCACACTGACTATATTATCTCTCTAAACTGTGATGATGTATCAAGAGGGAGTAGTACCTATATTGGAAAGTTGAGATCAAACTTTCTTGGCACCAAATTCACAGTGTATGATGCACACCCTCCAATTTATGGAGCCAAAGTTACAAAGTCTCGTTCCACCAGGCTAGTTAGTCTCAAGCAAGTTTCTCCAAGAGTTCCTGCTGGCAACTATCCCATTGCTCATGTGTCATATGATCTGAATGTTTTGGGCTCTAGGGGCCCTAGAATAATGCAATGTGTTATGGATGCCATCCCTGCCTCAGCTGTTGAACCTGGAGGTGTGGCCCCAACACAGACTCAATTTCTTCATAGCAGAATTGATACTTCTCCATCCATCCCTTTCTTTAGATCAAAATCAACCCGGATGGACAATCTCCCAACAGTACCTTTGACTTGTCAAAATGAGGGGACACTGGTATTACGAAACAAGTCCCCAAGGTGGCATGAACACCTTCAATGCTGGTGTCTGAACTTCAATGGGCGAGTGACAGTTGCTTCAGTTAAAAATTTCCAGCTGGTTGCTTCTCCCAAAAATGGAGTTTCTGAGCAGGCTCAGGAAAATGTAATTCTACAGTTTGGAAAAGTTGGAAAGGATGTATTCACCATGGATTATCAGTATCCAATCTCTGCCTTTCAAGCATTTGCAATATGCCTTAGCAGCTTTGACACCAAGATTGCTTGTGAATGA 1203 0.4447 MSFRSIILERKGFEVKFGYSMRSRSQSHSDAIAQDSLVVLDGLKQSCWANMPPELLRDVLMRIEASEDSWPAQKHVVACAGVCRSWREIMKEIVKSPQLSGKLTFPISLKQPGPRDSLLQCYIKRNRSNQTYYLFLGLNQASTDEGKFLLSARKCRRATHTDYIISLNCDDVSRGSSTYIGKLRSNFLGTKFTVYDAHPPIYGAKVTKSRSTRLVSLKQVSPRVPAGNYPIAHVSYDLNVLGSRGPRIMQCVMDAIPASAVEPGGVAPTQTQFLHSRIDTSPSIPFFRSKSTRMDNLPTVPLTCQNEGTLVLRNKSPRWHEHLQCWCLNFNGRVTVASVKNFQLVASPKNGVSEQAQENVILQFGKVGKDVFTMDYQYPISAFQAFAICLSSFDTKIACE 400
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma02g01390 400 Pfam F-box domain 48 94 IPR001810 GO:0005515
Gma02g01390 400 ProSitePatterns Tub family signature 2. 385 400 IPR018066 -
Gma02g01390 400 Pfam Tub family 109 395 IPR000007 -
Gma02g01390 400 SUPERFAMILY Tubby C-terminal domain-like 97 400 IPR025659 -
Gma02g01390 400 PRINTS Tubby superfamily signature 163 179 IPR000007 -
Gma02g01390 400 PRINTS Tubby superfamily signature 179 203 IPR000007 -
Gma02g01390 400 PRINTS Tubby superfamily signature 228 255 IPR000007 -
Gma02g01390 400 PRINTS Tubby superfamily signature 312 329 IPR000007 -
Gma02g01390 400 PRINTS Tubby superfamily signature 330 346 IPR000007 -
Gma02g01390 400 PRINTS Tubby superfamily signature 357 376 IPR000007 -
Gma02g01390 400 PRINTS Tubby superfamily signature 378 400 IPR000007 -
Gma02g01390 400 PANTHER TUBBY-RELATED 1 399 - -
Gma02g01390 400 SUPERFAMILY F-box domain 42 91 IPR036047 GO:0005515
Gma02g01390 400 Gene3D Tubby Protein; Chain A 106 400 IPR025659 -
Gma02g01390 400 PANTHER TUBBY-LIKE F-BOX PROTEIN 3-RELATED 1 399 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma02g01390 Gma-Chr2 16050913 16054963 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma02g01390 1 400 TUB Transcription Factor Family AT2G47900 73.786 0.0 610
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Gma02g01390 Tub 1.1e-109 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma02g01390 K19600 - gmx:100809257 811.216
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma02g01390 02 16050913 16054963 Gma02g01390 02 16050913 16054963 ECH