Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma02g01385 ATGGCGGAGGGTAAGGAAGAGAGTAAATCTAGCGAGGAGAGCGTGAAGCTGTTCGTAGGTCAAGTGCCGAAGCGCATGTCGGAAGACGAAGTGCTTGCAATGTTCAAGGAGCTCGCTTTGGTTGACGAGGTCAACATCATCAGAGACAAAGCCACTCGTGCCTCCCGAGGTTGTTGCTTTGTAATTTGTCCGTCCAGGGAAGAAGCGGATAAGGCGGTCAATGCATGTCATAACAAGAAAACGCTCCCTGGGGCATCTAGTCCGTTACAAGTGAAGTATGCAGATGGCGAATTGGAAAGATTAGAACACAAACTCTTTATCGGAATGCTTCCAAAGAATATTTCTGAAGATGAGGTCTCCAATCTTTTCTCAAAGTATGGAACTATAAAGGATTTACAGATTTTAAGAGGTTCTCAGCAGACAAGTAAAGGATGTGCATTTTTGAAGTACGAAACCAAAGAACAGGCCTTTACTGCTCTTGAAGCAATCAATGGAAAGCATACAATGGAGGGTTCAAGTGTTCCTTTGGTTGTTAAATGGGCAGATACTGAAAAGGAAAGACTAGCTCGAAGGGCTCAAAAAACACAGTCCCGAGTTTCTAATGCGCCGCATGCTGATCCTCAACACCCCTCATTATTTGGAGCCTTGCCAATGGGTTATGTTCCTCCATATAATGGATATGGTTATCAGGCTCCTGGGGGTTATGGGCTCATGCCATACCGTTTTCCACCAGTGCAGAATCAACCAGGCTTCCATAATATGAACCAAGCAAATGCAGTGAGGCCTGATCTTGGTCACAGTATGAACCCTAGAAATTATCCTGCGCCTCCTGCAAGTTACATTGGCTCTTACCCTGCTGTTCCAGGTATACAGCATCCAATGGTATATCCCAGAGGTATTGTAAGTCCGAGGCCGATGAGTAGTTGTCCTGGTTCTGTTTCACCTGCAGGTGGGAATAGCAACTCTTCATCTTCAGGTGCCAGTAAAAGTTCCAGTGGTCAGATTGAAGGACCACCTGGTGCCAATCTATTTATTTATCACATACCTCAAGAATATGGAGACCAAGAGCTCACAACTGCATTTCAACCGTTTGGTAGAGTTTTGAGTGCTAAAATTTTCGTAGATAAAGTAACAGGAGTAAGCAAATGTTTTGGGTTTGTTAGTTATGATACTCCAGAAGCTGCTCAAGCTGCCATTAGTACGATGAATGGTTGTCAATTAGGTGGCAAGAAATTAAAGGTTCAGCTTAAGAGGGATAACAAACAGAGTAAGATTTACTGA 1281 0.4403 MAEGKEESKSSEESVKLFVGQVPKRMSEDEVLAMFKELALVDEVNIIRDKATRASRGCCFVICPSREEADKAVNACHNKKTLPGASSPLQVKYADGELERLEHKLFIGMLPKNISEDEVSNLFSKYGTIKDLQILRGSQQTSKGCAFLKYETKEQAFTALEAINGKHTMEGSSVPLVVKWADTEKERLARRAQKTQSRVSNAPHADPQHPSLFGALPMGYVPPYNGYGYQAPGGYGLMPYRFPPVQNQPGFHNMNQANAVRPDLGHSMNPRNYPAPPASYIGSYPAVPGIQHPMVYPRGIVSPRPMSSCPGSVSPAGGNSNSSSSGASKSSSGQIEGPPGANLFIYHIPQEYGDQELTTAFQPFGRVLSAKIFVDKVTGVSKCFGFVSYDTPEAAQAAISTMNGCQLGGKKLKVQLKRDNKQSKIY 426
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma02g01385 426 Gene3D - 100 190 IPR012677 -
Gma02g01385 426 Gene3D - 311 418 IPR012677 -
Gma02g01385 426 CDD RRM3_CELF1-6 343 415 - -
Gma02g01385 426 SUPERFAMILY RNA-binding domain, RBD 103 421 IPR035979 GO:0003676
Gma02g01385 426 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 341 419 IPR000504 GO:0003723
Gma02g01385 426 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 103 183 IPR000504 GO:0003723
Gma02g01385 426 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 15 96 IPR000504 GO:0003723
Gma02g01385 426 CDD RRM1_2_CELF1-6_like 16 92 - -
Gma02g01385 426 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 343 413 IPR000504 GO:0003723
Gma02g01385 426 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 17 81 IPR000504 GO:0003723
Gma02g01385 426 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 105 167 IPR000504 GO:0003723
Gma02g01385 426 PANTHER RNA-BINDING PROTEIN-DEFENSE RELATED 1-RELATED 7 413 - -
Gma02g01385 426 MobiDBLite consensus disorder prediction 307 335 - -
Gma02g01385 426 PANTHER RNA BINDING PROTEIN 7 413 - -
Gma02g01385 426 Gene3D - 2 99 IPR012677 -
Gma02g01385 426 PRINTS Paraneoplastic encephalomyelitis antigen family signature 15 30 IPR002343 GO:0003723|GO:1990904
Gma02g01385 426 PRINTS Paraneoplastic encephalomyelitis antigen family signature 108 123 IPR002343 GO:0003723|GO:1990904
Gma02g01385 426 PRINTS Paraneoplastic encephalomyelitis antigen family signature 123 135 IPR002343 GO:0003723|GO:1990904
Gma02g01385 426 PRINTS Paraneoplastic encephalomyelitis antigen family signature 164 181 IPR002343 GO:0003723|GO:1990904
Gma02g01385 426 CDD RRM1_2_CELF1-6_like 104 179 - -
Gma02g01385 426 SMART rrm1_1 104 179 IPR000504 GO:0003723
Gma02g01385 426 SMART rrm1_1 342 415 IPR000504 GO:0003723
Gma02g01385 426 SMART rrm1_1 16 92 IPR000504 GO:0003723
Gma02g01385 426 SUPERFAMILY RNA-binding domain, RBD 9 98 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma02g01385 Gma-Chr2 16001613 16005522 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma02g01385 340 425 Eukaryotic Initiation Factors Gene Family AT2G23350 31.818 1.78e-07 51.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma02g01385 K13207 - gmx:100807662 808.905
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma02g01385 02 16001613 16005522 Gma02g01385 02 16001613 16005522 ECH
Gma10g00213 10 1964091 1968033 Gma02g01385 02 16001613 16005522 GST
Gma19g01956 19 48666428 48671007 Gma02g01385 02 16001613 16005522 PCT
Gma03g01918 03 45042555 45047637 Gma02g01385 02 16001613 16005522 PCT
Gma02g01385 02 16001613 16005522 Gma19g01956 19 48666428 48671007 PCT
Gma02g01385 02 16001613 16005522 Gma03g01918 03 45042555 45047637 PCT