Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma02g01372 ATGATTTCCCTCTTCCACCTCTTTCTCTTCCTATCTCTCCCTCTCTCTTGTCTATGTGACACGTGTCCCCTGAACTTCACCATCCTGGGCAGCACGAAACCCAGCTCCTTCGACACCTCGCGGTGCCAGGTGATCAGCCAATCCCTCCGCCTCGTCCTATCCGACTACCTCCGCCGCAGCGGCTTCTTCCTCCCTCCCCTCAACGCCTCCGACACATGCTGGACCCACTTCCAGTCCTACGTTAACAACTTCGACCCAACCTACAATATCACCTCCTCCTGCGGTTTCCAAACCTCGTGGATCTCCCAAGGCTGCAACAACGTCACCACCAAACAAGACTTCGAGTCCCTGGTCCCTCAACCATCCCTCCAGAACATCCGTAACAACTGCAACCAATCGCTCGAGAACAACTCCCCCTGCGCCCTCTGCACCTCTTCGTTTTCCCCTCTCCCGCCACTGGGAGACTCCGTCGGAAACCTCACCCACTGCACCGACTACGCTTTTATCTACGCCGCCGCTTTCGCCAACCGCTTCGGCCCCTCCGACCCCGGCACCGCCAAGTGCTTGTTCTCCCTTCAGTTCTCCTCTAACAACAACAATTCCTCCTCCAAGAGAAAAAAGGTTATTATTGCTGTTGTTTCTGTTGTCTGTGTCTTGGTCGTGTTACTGCTGGCTCTCTGGGTTTGGGTTTATTGCAAGCTGGAAGACAAGGTTTTGGCCGGGGATAAGGATGTTCGTGTCTCGGAAATCAGTTTGGTTTCTGGATTGGATTCCATGGAGCAGAGCACAACCTTGATCAGGTTCACTTTTGATGATATTAAGAAAGCAACCAAGAATTTCTCGAGGGATAACATAGTTGGGAGAGGTGGCTACGGGAATGTGTACAAAGGCTTGCTTCCTGATGGGAGCGAGGTTGCGTTTAAGAGGTTCAAGAATTGTTCTGCTTCCGGTGATGCAAGCTTCACTCACGAAGTTGAGGTTATTGCAAGTGTCAGACATGTCAACCTTGTTGCTTTGAGAGGCTATTGTTCTGTTACTACTCGTTTGGAAGGTTACCAGAGGATCATTGTTTGTGATATGGTGAAAAACGGGAGCCTCCACGACCATTTGTTTGGTTCTAATGGTATGAAATTGAGTTGGCCAATTCGTCAGAAGATTGCTCTAGGCACTGCTAGAGGGTTGGCTTATTTGCATTATGGGGCTCAACCTGCAATCATTCATAGAGATATTAAAGCAAGTAATATACTTCTTGATGATAAGTTTGAAGCTAAAGTTGCAGATTTTGGACTAGCCAAGTTCAACCCTGAGGGGATGACACATATGAGCACTAGGGTTGCTGGAACAATGGGGTATGTTGCTCCTGAATATGCTTTGTATGGGCAATTGACAGAGAGAAGCGATGTGTTCAGTTTTGGGGTTGTGCTTCTTGAGCTTTTGAGTGGGAGGAAGGCTCTTCAGATGAACAATGATGGTCAACCTTCTGCTTTGACTGATTGGGCTTGGTCATTGGTTAGAACGGGTAAAGCTTTGAGTGTTATTGAAGATGGCATGCCACAACCGGGTTCAGAACAAGTTCTTGAGAAGTATGTGTTAATTGCTGTGCTTTGTTCTCATCCACAGTTGTATGCTAGGCCTACAATGGATCAGGTTGTTAAAATGATGGAGACTGATGAATCAGTGCCTTCAATACCTGAAAGGCCAATTCCTCTTGTTGCTGGGAGGCTTGATATTGAGAGATCTGTGAGTAGTAGTGGCTCTGGTCAGCTCTCTAGTCCAACGGGTTATCAATCATATACTATAGAAAGTGATCGTCAATCTTCTAATTCTAGGGATGAAAGAAGCTCAAGCTCTAGCTCTAGGATTTTGAGTACAGATTGA 1878 0.4771 MISLFHLFLFLSLPLSCLCDTCPLNFTILGSTKPSSFDTSRCQVISQSLRLVLSDYLRRSGFFLPPLNASDTCWTHFQSYVNNFDPTYNITSSCGFQTSWISQGCNNVTTKQDFESLVPQPSLQNIRNNCNQSLENNSPCALCTSSFSPLPPLGDSVGNLTHCTDYAFIYAAAFANRFGPSDPGTAKCLFSLQFSSNNNNSSSKRKKVIIAVVSVVCVLVVLLLALWVWVYCKLEDKVLAGDKDVRVSEISLVSGLDSMEQSTTLIRFTFDDIKKATKNFSRDNIVGRGGYGNVYKGLLPDGSEVAFKRFKNCSASGDASFTHEVEVIASVRHVNLVALRGYCSVTTRLEGYQRIIVCDMVKNGSLHDHLFGSNGMKLSWPIRQKIALGTARGLAYLHYGAQPAIIHRDIKASNILLDDKFEAKVADFGLAKFNPEGMTHMSTRVAGTMGYVAPEYALYGQLTERSDVFSFGVVLLELLSGRKALQMNNDGQPSALTDWAWSLVRTGKALSVIEDGMPQPGSEQVLEKYVLIAVLCSHPQLYARPTMDQVVKMMETDESVPSIPERPIPLVAGRLDIERSVSSSGSGQLSSPTGYQSYTIESDRQSSNSRDERSSSSSSRILSTD 625
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma02g01372 625 Pfam SPARK 21 148 IPR043891 -
Gma02g01372 625 ProSitePatterns Serine/Threonine protein kinases active-site signature. 405 417 IPR008271 GO:0004672|GO:0006468
Gma02g01372 625 MobiDBLite consensus disorder prediction 579 604 - -
Gma02g01372 625 PANTHER RECEPTOR-LIKE KINASE IN IN FLOWERS PROTEIN 10 609 - -
Gma02g01372 625 PANTHER OS01G0253100 PROTEIN 10 609 IPR045271 GO:0004714|GO:0006468
Gma02g01372 625 ProSitePatterns Protein kinases ATP-binding region signature. 286 308 IPR017441 GO:0005524
Gma02g01372 625 Gene3D Transferase(Phosphotransferase) domain 1 361 562 - -
Gma02g01372 625 CDD STKc_IRAK 286 555 - -
Gma02g01372 625 Pfam Protein kinase domain 281 552 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma02g01372 625 ProSiteProfiles Protein kinase domain profile. 280 560 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma02g01372 625 MobiDBLite consensus disorder prediction 611 625 - -
Gma02g01372 625 SMART serkin_6 280 554 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma02g01372 625 Gene3D Phosphorylase Kinase; domain 1 245 359 - -
Gma02g01372 625 SUPERFAMILY Protein kinase-like (PK-like) 263 567 IPR011009 -
Gma02g01372 625 MobiDBLite consensus disorder prediction 579 625 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma02g01372 Gma-Chr2 15890879 15892881 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma02g01372 21 609 Receptor kinase-like Gene Family AT2G48010 62.626 0.0 759
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RKF3 Gma02g01372 Pkinase 4.1e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma02g01372 - - gmx:100794233 1122.07
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma02g01372 02 15890879 15892881 Gma02g01372 02 15890879 15892881 ECH
Gma02g01372 02 15890879 15892881 Gma10g00225 10 2071525 2074300 ECH
Gma10g00225 10 2071525 2074300 Gma02g01372 02 15890879 15892881 GST
Gma19g01438 19 43645259 43646989 Gma02g01372 02 15890879 15892881 PCT
Gma03g01372 03 39890880 39892137 Gma02g01372 02 15890879 15892881 PCT
Gma02g01372 02 15890879 15892881 Gma19g01438 19 43645259 43646989 PCT
Gma02g01372 02 15890879 15892881 Gma03g01372 03 39890880 39892137 PCT