Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma02g01364 ATGATTCCTTGGGGTGGCCTCAGTTGCTGTTTGAGTGCCGCTGCTCTTTACCTTCTCGGCAGAAGCAGTGGCAGGGATGCTGAAATTCTTAAATCCGTTACAAGGGTCAACCAGTTGAAGGAACTAGCTCAACTATTAGATGCAGAAATATTACCCTTGATTGTTACAATTTCTGGAAGAGTTAGCTCTGAAACCCCAATTAACTGCGAGTTCAGTGGTTTAAGAGGTGTAATAGTTGAAGAAACAGCAGAGCAACATTTTCTTAAACACAATGATGCTGGTTCCTGGATACAAGATTCTGCTTTGATGCTATCAATGAGTAAAGAGGTTCCTTGGTATCTGGATGATGGGACTGATCGTGTGCATGTGGTTGGAGCTCGGGGTGCTGCTGGTTTTGCATTACCTGTTGGAAGTGAGGCATTTGAAGAGTCGGGTCGCTCACTTGTACGTGGAACTTTGGATTATCTGCAAGGTCTCAAGATGCTTGGAGTCAAGAGAATTGAACGGGTACTTCCAGTTGGAACTTCCTTGACTGTTGTTGGTGAGGCTGCTAAAGATGATGTTGGGGCTTTTCGAATTCAGCGACCCCACAAAGGGCCATTTTATGTCTCTCCCAAAACAATTGATCAACTAATTGCAAATCTGGGGAAATGGGCAAGGTGGTATAAGTATGCTTCTATGGGCTTGACAGTGTTTGGTGCTTATCTGATAGCCAAGCATGCTATTCGGTACATATTGGAAAGACGGCGTCGCAGCGAACTTCAAAGAAGGGTTCTTGCTGCAGCTGCTAAGAAGTCGGGACAAAATAATGATGTTGAAAAGGCTGACGGCTTATCAGATGGTGTTAAAAAGGATCGCTTAATGCCAGATTTGTGTGTAATATGCCTTGAGCAGGAATATAATGCTGTTTTTGTTCCGTGTGGGCATATGTGCTGCTGTACAACTTGTTCTTCACACTTGACCAATTGTCCTCTATGCCGGCGACAGATAGAGAAGGTTGTGAAGACTTTCCGTCATTGA 1020 0.4431 MIPWGGLSCCLSAAALYLLGRSSGRDAEILKSVTRVNQLKELAQLLDAEILPLIVTISGRVSSETPINCEFSGLRGVIVEETAEQHFLKHNDAGSWIQDSALMLSMSKEVPWYLDDGTDRVHVVGARGAAGFALPVGSEAFEESGRSLVRGTLDYLQGLKMLGVKRIERVLPVGTSLTVVGEAAKDDVGAFRIQRPHKGPFYVSPKTIDQLIANLGKWARWYKYASMGLTVFGAYLIAKHAIRYILERRRRSELQRRVLAAAAKKSGQNNDVEKADGLSDGVKKDRLMPDLCVICLEQEYNAVFVPCGHMCCCTTCSSHLTNCPLCRRQIEKVVKTFRH 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma02g01364 339 Pfam E3 Ubiquitin ligase 85 233 IPR022170 GO:0004842|GO:0006996|GO:0016567
Gma02g01364 339 CDD RING-HC_LRSAM1 291 330 - -
Gma02g01364 339 PANTHER - 1 306 IPR044231 GO:0004842|GO:0016567
Gma02g01364 339 ProSiteProfiles Zinc finger RING-type profile. 292 327 IPR001841 -
Gma02g01364 339 Pfam Zinc finger, C3HC4 type (RING finger) 290 333 - -
Gma02g01364 339 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 262 338 IPR013083 -
Gma02g01364 339 SUPERFAMILY RING/U-box 291 333 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma02g01364 Gma-Chr2 15773610 15778314 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma02g01364 1 266 C3H Transcription Factor Family AT1G63900 79.104 4.05e-156 437
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma02g01364 K15688 - gmx:100800734 666.381
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma02g01364 02 15773610 15778314 Gma02g01364 02 15773610 15778314 ECH