Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma02g01348 ATGACTGCGCCACTAGACACTGGCCTTCAAAGCATGTTGCAGGCTGCGGTGCAATCTGTTCACTGGACTTACAGCCTCTTCTGGCAACTTTGTCCACAGCAAGTGATTCTGGTTTGGGGTGATGGTTACTACAATGGAGCAATTAAGACACGGAAGACGGTGCAACCAATGGAGGTGAGTGCTGAGGAGGCTTCTCTCCAAAGAAGTCAGCAACTTAGAGAACTTTATGAATCATTGTCCGTCGGAGAGACAAATCCGCCGACTCGCCGGCCTTGTGCTGCCTTGTCGCCGGAGGACTTAACAGAATCTGAATGGTTCTATTTGATGTGTGTCTCATTCTCCTTTCCTCCTGGTGTTGGGTTGCCTGGAAAGGCATATGCCAGGAGGCAGCATCTATGGCTCACTGGTGCAAACGAGGTGGACAGCAAAACATTTTCACGAGCTATTCTAGCCAAGACCGTGGTGTGCATTCCTTTATTGGATGGCGTCGTTGAATTTGGGACAACAGATAAGGTTCAAGAAGATCTTAGCTTCATCCAACACGTGAAGACTTTTTTCATAGACCATCTCATCCCTCTCAGGCCAAAGCCTGCCCTATCGGAGCACTCAACCTCCAACCCTACCTCCTCCGACCACATCCCCACAGTCATGTACACCATGGTGGACCCACCTGCCGCCAAGTGCAACCTAAATGATGACATGGATGAGGATATTGAAGAGGAAGAGGAGGAGGAAGAAGAGGACGAGGTGGAATCCGGTTCCGAAGATGAAACTGGAGACGGTATTGCCTGCCAAACTTTGAGACCATCAACGGTGGCAGAGCCCAGCGAGCTGATGCAGCTGGAGATGCCAGAGGACATTCGACTCGGGTCGCCGAACGATGGATCAAACAACCTGGACTCAGACTTTCATTTGCTTGCGGTGAGCCAGGGTGGCAATGAGGCAAGGCAGGCTGAGTCAACTCGAAGGTGGAGCTCAAGTCAAGAACCCATGCAAGTTCAACTACCGACTTCAGCCCTTCATCCATTAGAAGACTTGACCCAAGAGGACACTCACTACTCTCAAACGGTGTCCAACATCCTCCAAAACCAGACCACACGGTGGCTCGCCTCACCCTCCTCCATTGGCTACAACACATACTCCACGCATTCGGCATTCGCAAAATGGAGCAGCCGCGCCAGCCACCACTTCCACCCGGCGGCGGACGGCACCAGCCAGTGGCTCCTCAAGTACATCCTCTTCACGGTCCCGCACCTCCACGCCAAGAACCCCGGCGAGAGTTCTCCCCATACCGCGGCGGACACCAAGCTCCGCGGCAAGGGGACGCCGCAGGACGAGCTCAGTGCGAACCACGTGCTGGCCGAGCGCCGCCGCCGCGAGAAGCTGAATGAGAGGTTCATAATCCTGCGGTCGCTGGTCCCCTTCGTGACCAAAATGGACAAGGCGTCGATATTGGGAGACACCATCGAGTACGTGAAGCAGTTGCGGCGGAAGATCCAGGAGCTCGAGGCGCGTAACCGCTTAACGGAGGAGCGTTCCAAGCTCCCAGAGGTAGCAGTTCAGAGGACGAGTAGCAGTTCGAGCAAGGAGCAACAGAGGAGTGGGGTGACGATGATGGAAAAGAGGAAGGTGAGGATCGTGGAAGGGGTAGCGGCGAAGGCAAAGGCAGTGGAAGTTGAGGCCACCACGTCGGTGCAAGTTTCGATCATAGAGAGCGACGCGCTGTTGGAGATTGAGTGTCGTCACAGAGAAGGGTTACTTCTGGACGTGATGCAGATGCTGAGGGAGGTGAGGATAGAGGTTATAGGGGTGCAGTCTTCGCTTAACAATGGGGTGTTCGTGGCGGAGTTGAGGGCTAAGGTGAAGGAGCATGCAAACGGGAAGAAGGTCAGCATTGTGGAAGTGAAGAGGGCACTTAACCAAATTATACCCCATGCCGTTGACTAA 1947 0.5408 MTAPLDTGLQSMLQAAVQSVHWTYSLFWQLCPQQVILVWGDGYYNGAIKTRKTVQPMEVSAEEASLQRSQQLRELYESLSVGETNPPTRRPCAALSPEDLTESEWFYLMCVSFSFPPGVGLPGKAYARRQHLWLTGANEVDSKTFSRAILAKTVVCIPLLDGVVEFGTTDKVQEDLSFIQHVKTFFIDHLIPLRPKPALSEHSTSNPTSSDHIPTVMYTMVDPPAAKCNLNDDMDEDIEEEEEEEEEDEVESGSEDETGDGIACQTLRPSTVAEPSELMQLEMPEDIRLGSPNDGSNNLDSDFHLLAVSQGGNEARQAESTRRWSSSQEPMQVQLPTSALHPLEDLTQEDTHYSQTVSNILQNQTTRWLASPSSIGYNTYSTHSAFAKWSSRASHHFHPAADGTSQWLLKYILFTVPHLHAKNPGESSPHTAADTKLRGKGTPQDELSANHVLAERRRREKLNERFIILRSLVPFVTKMDKASILGDTIEYVKQLRRKIQELEARNRLTEERSKLPEVAVQRTSSSSSKEQQRSGVTMMEKRKVRIVEGVAAKAKAVEVEATTSVQVSIIESDALLEIECRHREGLLLDVMQMLREVRIEVIGVQSSLNNGVFVAELRAKVKEHANGKKVSIVEVKRALNQIIPHAVD 648
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma02g01348 648 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 448 512 IPR036638 GO:0046983
Gma02g01348 648 Gene3D - 447 517 IPR036638 GO:0046983
Gma02g01348 648 MobiDBLite consensus disorder prediction 518 534 - -
Gma02g01348 648 MobiDBLite consensus disorder prediction 236 256 - -
Gma02g01348 648 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 9 186 IPR025610 -
Gma02g01348 648 Coils Coil 231 251 - -
Gma02g01348 648 MobiDBLite consensus disorder prediction 515 537 - -
Gma02g01348 648 MobiDBLite consensus disorder prediction 313 331 - -
Gma02g01348 648 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 446 495 IPR011598 GO:0046983
Gma02g01348 648 SMART finulus 452 501 IPR011598 GO:0046983
Gma02g01348 648 MobiDBLite consensus disorder prediction 236 275 - -
Gma02g01348 648 Coils Coil 485 512 - -
Gma02g01348 648 MobiDBLite consensus disorder prediction 422 449 - -
Gma02g01348 648 PANTHER TRANSCRIPTION FACTOR TT8 8 645 - -
Gma02g01348 648 Pfam Helix-loop-helix DNA-binding domain 449 496 IPR011598 GO:0046983
Gma02g01348 648 MobiDBLite consensus disorder prediction 311 331 - -
Gma02g01348 648 PANTHER TRANSCRIPTION FACTOR TT8 8 645 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma02g01348 Gma-Chr2 15627827 15637428 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma02g01348 288 645 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G09820 37.845 6.27e-57 199
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gma02g01348 bHLH-MYC_N 1.2e-47 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma02g01348 - - gmx:100786815 1225.69
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma02g01348 02 15627827 15637428 Gma02g01348 02 15627827 15637428 ECH
Gma19g01847 19 47723915 47726267 Gma02g01348 02 15627827 15637428 PCT