Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma02g01321 atggagcagtacgaaattctagaacagattggaagaggttcctttgcctctgctctacttgtcaggcacaaacacgaaaacaaaaagtatgttcttaagaagatccgtcttgcccgccagactgacagaactcgtagatctgctcaccaggagATGGAGCTTATCTCTAAAGTTCGAAATCCATTTATTGTAGAGTATAAAGATTCCTGGGTGGAAAAGGGTTGCTTTGTATGTATCGTCATTGGCTATTGTGAAGGAGGAGATATGACGGAAGCAATTAAAAAGGCCAATGGCGTTCATTTTCCTGAAGAGAGGCTCTGTAAGTTGCTGGTTCAACTGCTGATGGCACTTGATTACTTGCATGCAAATCATATTCTTCATCGTGATGTCAAGTGTTCAAATATATTCTTGACTAAAGATCAAGATATACGTCTAGGTGACTTTGGTCTTGCTAAAATGTTGACATGCGATGATCTTGCGTCTTCAGTAGTGGGGACTCCAAGTTATATGTGCCCAGAGCTTCTTGCTGATATACCCTATGGCTCTAAGTCAGATATCTGGTCTTTGGGATGCTGTGTGTATGAAATGGCTGCTCACAAGCCAGCTTTTAAAGCTCTTGATATGCAAGCACTGATTAACAAAATAAACAAGTCGTTAGTGGCTCCACTACCAACAGTGTATTCTGGTTCTTTTCGAGGGCTTGTTAAGAGTATGCTGCGGAAGAATCCAGAGCTTCGGCCTAGTGCTGCGGAGTTACTAAATCATCCGCATCTTCAACCTTACATTCTTAAAATTCACTTGAAATTAAATAACCCCAGAAGAAGTACTTATCCATTCCCGTGGTCTGACTCAAACTATGTAAGGAGGACTCAGTTTGTCGAGCCAGGATCTGTTTCTACTCTGTCTGACAGAGGCAAACGATTCTCATTCAGCAATGACAGGGCCTTGAATCCTAGTATTTCTGGAACTGAGCTAGGTTCTGTGTGTTCTACTCAAAGAGCACTAGGATTCTCTACTTGTTCAAAAGAGAAGCACTATGAACTATCTGTTGGCCGTGTCCACAAAGAATGCAATTCTAACAAATCAAGAGACACAAAGTCCTCAACTGTTGATAGGATGCCAAGATTGAGAACAGCTAAGGAATATGCCACTCCCCGATGGCAGACTATACCATCAAAGATATCCCATACTGGTTCCAAGCGTGAGTTACTTCCATCCACTCCAGGTTGTAAATTCACCCTACCAACTAGAAGAGCTTCCCTTCCACTGCCTACCAGAACCACGGGCATGATCACCTCTTATAGAGCTAATGTTGGTCTTCTTCGAGGTGTGGACTCTCCTGATATTTCTGTCAATGCACCGCGAATTGACAAGATTGCTGAATTCCCTCTGGCTTCTTGTGAGGATTCTCTCTTTCCTGTTTGTGGAACTTCATCAACCTCAGCTCAGTGCTCTTCTGGTTCGCCAAAGAGTGCTGACTGCTTAATCACACAGGACAAGTGTACAATCCAAGTTGTGGACAAGGCCAGTGTCCCTTCCAGTGGCAGTGATGCTTGTCCTGCTGCTCCAGTTTCACATGGCAATGAATGCTCTGAACATGCTATTTCAAGCCACTCCTCTGCTGAGTCTCGTAAGCACAGATTTGACACCTCATCTTACCAACAACGCGCAAAGGCATTGGAGGGTTTGCTTGAGTTTTCTGCACGACTCCTACAGCAACAGAGGTTTGAAGAACTTGGGGTGTTGTTGAAGCCATTCGGTCCTGAGAAGGTTTCCCCTAGAGAAACTGCTATTTGGTTGGCCAAGAGCTTCAAGGAAACTGTGGCCTAA 1830 0.4033 MEQYEILEQIGRGSFASALLVRHKHENKKYVLKKIRLARQTDRTRRSAHQEMELISKVRNPFIVEYKDSWVEKGCFVCIVIGYCEGGDMTEAIKKANGVHFPEERLCKLLVQLLMALDYLHANHILHRDVKCSNIFLTKDQDIRLGDFGLAKMLTCDDLASSVVGTPSYMCPELLADIPYGSKSDIWSLGCCVYEMAAHKPAFKALDMQALINKINKSLVAPLPTVYSGSFRGLVKSMLRKNPELRPSAAELLNHPHLQPYILKIHLKLNNPRRSTYPFPWSDSNYVRRTQFVEPGSVSTLSDRGKRFSFSNDRALNPSISGTELGSVCSTQRALGFSTCSKEKHYELSVGRVHKECNSNKSRDTKSSTVDRMPRLRTAKEYATPRWQTIPSKISHTGSKRELLPSTPGCKFTLPTRRASLPLPTRTTGMITSYRANVGLLRGVDSPDISVNAPRIDKIAEFPLASCEDSLFPVCGTSSTSAQCSSGSPKSADCLITQDKCTIQVVDKASVPSSGSDACPAAPVSHGNECSEHAISSHSSAESRKHRFDTSSYQQRAKALEGLLEFSARLLQQQRFEELGVLLKPFGPEKVSPRETAIWLAKSFKETVA 609
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma02g01321 609 CDD STKc_Nek 3 258 - -
Gma02g01321 609 PANTHER SERINE/THREONINE-PROTEIN KINASE NEK 1 598 - -
Gma02g01321 609 ProSitePatterns Serine/Threonine protein kinases active-site signature. 125 137 IPR008271 GO:0004672|GO:0006468
Gma02g01321 609 ProSiteProfiles Protein kinase domain profile. 4 258 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma02g01321 609 Gene3D Transferase(Phosphotransferase) domain 1 84 271 - -
Gma02g01321 609 PANTHER SERINE/THREONINE-KINASE NEK4 1 598 - -
Gma02g01321 609 SMART serkin_6 4 258 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma02g01321 609 ProSitePatterns Protein kinases ATP-binding region signature. 10 33 IPR017441 GO:0005524
Gma02g01321 609 SUPERFAMILY Protein kinase-like (PK-like) 1 311 IPR011009 -
Gma02g01321 609 Gene3D Phosphorylase Kinase; domain 1 1 83 - -
Gma02g01321 609 Pfam Protein kinase domain 4 257 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma02g01321 Gma-Chr2 15321396 15327427 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma02g01321 10 259 MAP Kinase Kinase Kinase AT1G53570 30.588 2.03e-35 138
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK NEK Gma02g01321 Pkinase 4.7e-63 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma02g01321 K08857 - gmx:100787166 1199.88
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma02g01321 02 15321396 15327427 Gma02g01321 02 15321396 15327427 ECH
Gma10g00280 10 2571752 2577807 Gma02g01321 02 15321396 15327427 GST
Gma19g01501 19 44365541 44373183 Gma02g01321 02 15321396 15327427 PCT
Gma03g01444 03 40658246 40664514 Gma02g01321 02 15321396 15327427 PCT
Gma02g01321 02 15321396 15327427 Gma19g01501 19 44365541 44373183 PCT
Gma02g01321 02 15321396 15327427 Gma03g01444 03 40658246 40664514 PCT