Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma02g01315 ATGTTCCCTGCAGTTATGTCCAATTCCAATTCCTTGTCCGAAGAGGCCACTGTCTCCTGTGGTACAAGAATCGCTGGACTCAATCACGTTATCACAACAACCATTTCTCCAGAACAACCTCTAAAGATCAAGAAAAAGAGAAACCTCCCTGGAAACCCTGACCCAGATGCTGAAGTGATAGCTTTATCACCGAAGACTCTTCTGGCTACCAATAGAtttgtgtgtgagatctgcaacaagggtttccagagagatcagaaccttcagcttcataggagaggacataacctcccgtggaagctgaagcaaaggagcaacaaAGAGGTGAAAAAGAAGGCCTACGTTTGCCCTGAGCCTTCATGCGTTCACCACAACCCTTCAAGGGCTTTGGGGGACCTCACTGGAATTAAGAAACACTACTGCAGAAAACATGGGGAGAAGAAGTGGAAATGTGAAAAGTGCTCAAAGATCTATGCTGTTCAGTCAGATTGGAAAGCTCACTCTAAAACCTGTGGTACTAGAGAATATAGATGTGGTTGTGGAACCCTTTTTTCCAGGAAGGACAACTTCATAACTCACAGAGCATTCTGCGATGCATTGGCTGAAGAAAGTGCAAGACTCTCAGCAAACCAACTAGCCACCAACACCACAAATCCATTAGTTCAATCCCTCTTCCTTTTCCCAACCCAACAACACAACAACAATTTCATCAATCCATGGGaccctaaccctaaccctaaccctaaccctaaccctagcaaccttaccactctcCACAACAACATCAAACCTGAATCTCACAACTTCCACATCCCCAACACCACCACCACCTCCACTGCCAACAACAACATTTCTTCTTCATTCCTTCATCATCATCAACACCCCAATAAGAGCATGATAACCTCACCCTTCCGTGACCTCCACGAGCGCACGCAACCCCCCTCCAACGCTGCCACGTCAGCACACCTCTCAGCCACTGCGTTGCTCCAGAAGGCCGCGACCGTGGGTGCCGCCGCCATCACGGGACCCACTCACGTGACTCAGCTCAGCATGGCCGAGCTAGGAACCGAGACGACTCATCTGGACTCAGTGCCATTGCCGCCCGATCAACGCTACATGAGCATGAGAGGCATCAATAGTAACAATGACGGCCTCACGAGGGACTTTCTCGGCCTCACCAACGGCGGCGCGGTTGACGTTAGCATCGACGTCAAGGATATGCTGACGTTCACCGCGGGGAGCGTAGAGTACAACCATCACCACCACCAACAACAACCCTACCAGCACCACCATAATAACTCGCTTTTCAAGCCACAACAAGGTTTTGGATTCCTTGGGACAACCACTGGCCCCGAATACTGGGGAAATTGTGAGTAA 1377 0.4401 MFPAVMSNSNSLSEEATVSCGTRIAGLNHVITTTISPEQPLKIKKKRNLPGNPDPDAEVIALSPKTLLATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRSNKEVKKKAYVCPEPSCVHHNPSRALGDLTGIKKHYCRKHGEKKWKCEKCSKIYAVQSDWKAHSKTCGTREYRCGCGTLFSRKDNFITHRAFCDALAEESARLSANQLATNTTNPLVQSLFLFPTQQHNNNFINPWDPNPNPNPNPNPSNLTTLHNNIKPESHNFHIPNTTTTSTANNNISSSFLHHHQHPNKSMITSPFRDLHERTQPPSNAATSAHLSATALLQKAATVGAAAITGPTHVTQLSMAELGTETTHLDSVPLPPDQRYMSMRGINSNNDGLTRDFLGLTNGGAVDVSIDVKDMLTFTAGSVEYNHHHHQQQPYQHHHNNSLFKPQQGFGFLGTTTGPEYWGNCE 458
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma02g01315 458 MobiDBLite consensus disorder prediction 235 256 - -
Gma02g01315 458 ProSitePatterns Zinc finger C2H2 type domain signature. 75 95 IPR013087 -
Gma02g01315 458 PANTHER PROTEIN INDETERMINATE-DOMAIN 12 8 428 - -
Gma02g01315 458 Pfam Zinc finger, C2H2 type 73 95 IPR013087 -
Gma02g01315 458 ProSiteProfiles Zinc finger C2H2 type domain profile. 73 95 IPR013087 -
Gma02g01315 458 MobiDBLite consensus disorder prediction 275 300 - -
Gma02g01315 458 Gene3D Classic Zinc Finger 69 96 - -
Gma02g01315 458 SUPERFAMILY beta-beta-alpha zinc fingers 72 169 IPR036236 -
Gma02g01315 458 Gene3D Classic Zinc Finger 107 197 - -
Gma02g01315 458 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 8 428 - -
Gma02g01315 458 SMART c2h2final6 149 169 IPR013087 -
Gma02g01315 458 SMART c2h2final6 73 95 IPR013087 -
Gma02g01315 458 SMART c2h2final6 114 144 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma02g01315 Gma-Chr2 15267692 15271155 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma02g01315 17 429 IDZ Gene Family AT4G02670 48.848 4.46e-119 352
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Gma02g01315 zf-C2H2 0.0045 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma02g01315 K25870 - gmx:100780056 884.404