Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma02g01302 ATGCATGGGCGTGATCCTTTATGCTCAGAATCACTGCTGAAGAGAGTCGATAGAATCGCCGAGCGGAATCGTAAAAAATGGTTGAATCAACAAACGCTCACCCTCTCTCGCTGCAACGCTCAATCTCTCTGTTCTTCACAATCCTTTCTCTCGTTGggtgaaggaCTAGGGATTTTCTTCAGGACTTCAAGAAGACAGTGGGCAATGCTGGGCTTCTCATATGGAGAAATATTTCTGTCGCTTGGTGCTACTGCTGCTCTGATAGGGCCAAAGGATTTACCAATCATATGCAGAACAGCAGGAAGGCTAGCTGGTCGAGCTATTGGATGTGTACAATTGGCTCGTGGTCAGTTTGACACTGTTATGCAGCAATCTCAAGCTCGCCGGGTTCATAAGGAACTGCAAGACACAATGGCTCAGCTAGATGCCATTCATCATGAAATTCGAAAGTCCCCCGCCATAAAAAATGAGTTGTCAGCAAGTAGTACTGAAGTGGAGAAGATAGAAGACAAACTACAGCTTACTGTCTTACCAATTTCTGCTGAAAATGCTGGACTATTACCAAACCGTGGGGttgatgtgaaaggatctggcatagttctagaagcaattgtggaggcagagTTAGAACTCGTTTCCCTAACTCGGCCGAGTCCGCACCAGCGAGTCATCATGGCGAATCACCCCTCCCAAGCCTCCACCGACGACTTCCTTGACCAAATCCTCGGCCTCTCGACCTTCGCCTCCGCCGACGCCTCTCCGATGATGCTTCAGCTCAACTCCGGCGACGCCGCCACCCACCTAGCCTCCTTCCACGCGCCGCCCTACCAGCTCGGCCTCAGCCTGGACCAAGGTAAGGGACCCTTCCTCACGCCTGAGGACGCTTCTGGAAGCGGCAAGCGTTTCCGCGACGACGTCGTTGATACCAGACCTAACAACGTTTTTGATGGGCAACCCATGCCTACAACTGTTCCTACTGCTCCACATCTACCAGCAGTGCGACCTAGAGTGCGGGCTAGAAGAGGACAGGCTACAGATCCACATAGTATAGCTGAAAGGTTGCGCAGAGAGAGAATAGCAGAAAGAATCAGGGCTTTGCAAGAACTGGTCCCTAGTGTCAACAAGacagatagagctgccatgctggacgaaattgtggattatgtcaagttcttgaggcttcaagtgaagGTTTTGAGCATGAGTAGAATTGGTGGAGCTGATGCAGTGGCACCACTGGTAACTGACATCCCATTATCGTCAGTCGAGGAAGAAGGCGGTGAGGGAAGAAACCAGCCAGCTTGGGAGAAGTGCTCAAATGATGGCACAGAAAGACAGGTAGCCAAGCTTATGGAAGAAAATGTTGGTGCTGCCATGCAGTTTCTTCAATCAAAAGCACTCTGCATCATGCCCGTCTCACTAGCATCAGCAATATACCAGTCACAACCATCAGACACTTCTAGTATAGTTAAGCCTGAAATTAATCCTCCTTCATAG 1497 0.4589 MHGRDPLCSESLLKRVDRIAERNRKKWLNQQTLTLSRCNAQSLCSSQSFLSLGEGLGIFFRTSRRQWAMLGFSYGEIFLSLGATAALIGPKDLPIICRTAGRLAGRAIGCVQLARGQFDTVMQQSQARRVHKELQDTMAQLDAIHHEIRKSPAIKNELSASSTEVEKIEDKLQLTVLPISAENAGLLPNRGVDVKGSGIVLEAIVEAELELVSLTRPSPHQRVIMANHPSQASTDDFLDQILGLSTFASADASPMMLQLNSGDAATHLASFHAPPYQLGLSLDQGKGPFLTPEDASGSGKRFRDDVVDTRPNNVFDGQPMPTTVPTAPHLPAVRPRVRARRGQATDPHSIAERLRRERIAERIRALQELVPSVNKTDRAAMLDEIVDYVKFLRLQVKVLSMSRIGGADAVAPLVTDIPLSSVEEEGGEGRNQPAWEKCSNDGTERQVAKLMEENVGAAMQFLQSKALCIMPVSLASAIYQSQPSDTSSIVKPEINPPS 498
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma02g01302 498 Pfam Helix-loop-helix DNA-binding domain 348 392 IPR011598 GO:0046983
Gma02g01302 498 MobiDBLite consensus disorder prediction 291 329 - -
Gma02g01302 498 SMART finulus 349 398 IPR011598 GO:0046983
Gma02g01302 498 Gene3D - 338 400 IPR036638 GO:0046983
Gma02g01302 498 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 341 402 IPR036638 GO:0046983
Gma02g01302 498 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 343 392 IPR011598 GO:0046983
Gma02g01302 498 PANTHER BINDING PROTEIN, PUTATIVE-RELATED 231 487 - -
Gma02g01302 498 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 231 487 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma02g01302 Gma-Chr2 15084780 15096689 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma02g01302 271 497 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G02590 79.149 1.03e-111 329
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gma02g01302 HLH 2.3e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma02g01302 - - gmx:100820324 500.745
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma02g01302 02 15084780 15096689 Gma10g01598 10 43064601 43069686 ECH
Gma02g01302 02 15084780 15096689 Gma02g01302 02 15084780 15096689 ECH