Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma02g01300 ATGGAGAATTCATTGGGAAAGTACGGAAAAGAGCTTAATCTCGAGGCTACAGAGTTGAGGTTGGGGTTGCCTGGAAGCGATGAGCCTGAGAAACGTTCTGCTGTTAGAAGCAACAAGAGATCTTCACCAGAAGCAAGTGAAGAAGAGTGCATAAGCAAGGGCAACATGAATTCTTCTGATGGTTCTGATATCACAAGTGATGACCAAGACAACGTTGTGCCacctgcaaaGGCACAAGTAGTGGGATGGCCACCGGTTCGATCATATAGGAAGAATAGTCTACAACAAAAGAAAGAAGAACAGGCTGAAGGGGCTGGGATGTACGTGAAAGTTAGCATGGAAGGTGCACCTTACTTGAGGAAGATAGATCTAAAGGTTTACAAGAGCTACCCAGAACTCCTCAAGGCCTTGGAAAACATGTTCAAGTGCACATTTGGTCAATATTCGGAAAGGGAAGGGTATAATGGATCTGAATATGCTccaacttatgaagacaaggatggggattggatgctggttggagatgttccatggaaCATGTTTGTGTCATCCTGCAAGAGGCTGAGAATTATGAAAGGATCAGAAGCAAAGGGGTTGGGTTGTTTTTGA 609 0.3957 MENSLGKYGKELNLEATELRLGLPGSDEPEKRSAVRSNKRSSPEASEEECISKGNMNSSDGSDITSDDQDNVVPPAKAQVVGWPPVRSYRKNSLQQKKEEQAEGAGMYVKVSMEGAPYLRKIDLKVYKSYPELLKALENMFKCTFGQYSEREGYNGSEYAPTYEDKDGDWMLVGDVPWNMFVSSCKRLRIMKGSEAKGLGCF 202
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma02g01300 202 Pfam AUX/IAA family 17 200 IPR033389 -
Gma02g01300 202 MobiDBLite consensus disorder prediction 18 71 - -
Gma02g01300 202 SUPERFAMILY CAD & PB1 domains 102 192 - -
Gma02g01300 202 MobiDBLite consensus disorder prediction 51 69 - -
Gma02g01300 202 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 2 200 IPR003311 GO:0005634|GO:0006355
Gma02g01300 202 MobiDBLite consensus disorder prediction 24 47 - -
Gma02g01300 202 ProSiteProfiles PB1 domain profile. 106 193 IPR000270 GO:0005515
Gma02g01300 202 Gene3D - 100 202 - -
Gma02g01300 202 PANTHER AUXIN-INDUCED PROTEIN 2 200 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma02g01300 Gma-Chr2 15072998 15074642 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma02g01300 34 199 B3 DNA Binding Superfamily AT2G46530 31.250 1.46e-13 66.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Gma02g01300 AUX_IAA 8.7e-61 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma02g01300 K14484 - gmx:100780752 412.535
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma02g01300 02 15072998 15074642 Gma02g01300 02 15072998 15074642 ECH
Gma10g00303 10 2805057 2806827 Gma02g01300 02 15072998 15074642 GST
Gma19g01520 19 44553574 44554727 Gma02g01300 02 15072998 15074642 PCT
Gma03g01460 03 40832803 40834392 Gma02g01300 02 15072998 15074642 PCT
Gma02g01300 02 15072998 15074642 Gma19g01520 19 44553574 44554727 PCT
Gma02g01300 02 15072998 15074642 Gma03g01460 03 40832803 40834392 PCT