Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma02g01298 ATGGTGTTTGAGGAAACTGAGCTGAGGCTGGGACTGGGACTATGTCTCCCTGGAAATGGAACCACGGCAACAACTGAAGCTGCTGCTGCGGAATTAGGAGTGAGGAAGAGAGGGTTCTCTGAGACTGAAACTGATGAAACAGCCACCGTTGATTTGATGCTTAACCTCTCACCCAAGGAAGCTGCTGCTGCTGATGGTGCAGATCCACGTGAGAAGCCAAAGACTTCGCCGAAGGAGAAGACCCTTCTGCTTCCCGATCCCGCCAAGCCTCCTGCCAAGGCGCAAGTGGTGGGATGGCCACCCGTGAGGTCTTTCCGGAAGAACATGTTCGCAGCCCAAAAGAGCAGCGGCGGAGAGGAAAGCGAAAAGAGCAGCCCTAATGCAAGCTTTGTCAAAGTTAGCATGGATGGAGCACCTTACCTCCGCAAAGTTGACTTGAAGATGTACAAGAGTTACCCAGAGCTCTCTGATGCCTTGGGCAAAATGTTTAGCTCCTTCACCATTGGAAATTGTGAATCCCAAGGCTTCAAGGATTTCATGAATGAGAGCAAGTTGATGGATCTTTTGAACAGCTCCGACTatgtcccgacctatgaagacagggatggcgactggatgcttgtcggtgatgtgccatgggaGATGTTTGTTGAATCATGCAAGCGTTTACGTATCATGAAAGGAAAGGAAGCTATTGGACTGGCACCAAGAGCCGTGGAGAAATGCAAGAACAGGAGCTAG 741 0.4602 MVFEETELRLGLGLCLPGNGTTATTEAAAAELGVRKRGFSETETDETATVDLMLNLSPKEAAAADGADPREKPKTSPKEKTLLLPDPAKPPAKAQVVGWPPVRSFRKNMFAAQKSSGGEESEKSSPNASFVKVSMDGAPYLRKVDLKMYKSYPELSDALGKMFSSFTIGNCESQGFKDFMNESKLMDLLNSSDYVPTYEDRDGDWMLVGDVPWEMFVESCKRLRIMKGKEAIGLAPRAVEKCKNRS 246
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma02g01298 246 Pfam AUX/IAA family 5 237 IPR033389 -
Gma02g01298 246 MobiDBLite consensus disorder prediction 64 79 - -
Gma02g01298 246 MobiDBLite consensus disorder prediction 61 95 - -
Gma02g01298 246 PANTHER AUXIN-INDUCED PROTEIN AUX28 1 239 - -
Gma02g01298 246 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 1 239 IPR003311 GO:0005634|GO:0006355
Gma02g01298 246 ProSiteProfiles PB1 domain profile. 128 228 IPR000270 GO:0005515
Gma02g01298 246 Gene3D - 122 240 - -
Gma02g01298 246 SUPERFAMILY CAD & PB1 domains 124 227 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma02g01298 Gma-Chr2 15048424 15051821 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma02g01298 120 236 B3 DNA Binding Superfamily AT4G23980 33.333 1.25e-09 56.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Gma02g01298 AUX_IAA 2.8e-83 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma02g01298 K14484 - gmx:100780214 470.7
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma02g01298 02 15048424 15051821 Gma19g02311 19 51805503 51807996 ECH
Gma02g01298 02 15048424 15051821 Gma03g02274 03 48013328 48015961 ECH
Gma02g01298 02 15048424 15051821 Gma10g01599 10 43075904 43079179 ECH
Gma02g01298 02 15048424 15051821 Gma02g01298 02 15048424 15051821 ECH