Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma02g01291 ATGGTGGTTATAGCTCAACCTATGATATTGAGGATTAAATCTTCACCGATCCACACTTGGCTACACTACTTAGGTGATTGTAGCGAAGAAGTGGACGTAAATTTGCATGCAGTGATAGGAGGATTCATATATACGTGGGTGAAGGACGTTGATGATGACGATGAAGAGTTCCTCAAAGAAGCCACTGCTATTTCCCTTTGCCTGCATACGTTTTGCAGGAAGTGCATTTATGACAAAATTACAGATGAAGAATTGGAAAATTGTCCAGTATGCAACATTGATTTGGGCATTGTTCCGCTTGAGAAAATGAGGCCAGATAACATTTTGCAAGATTTAAGGAACAAGATTTTCCCTTTCAAAAAAAGAAAGGAGAAGGCACCTGTATCTGTCTCTTCAGTACTATTACCAGCTAGAAGAAAGGAGAGATCACTGTCGTCTTTGGTTGTCAGCACTCCAAGGGTATGTACACAGTCAACCATGACAGGAAGAAGAACAAAACCTGCAAGAAAGGCTAGTGGCCTGCAGGGATCTAGTTTATCCATTGAGAAGTTCATTAAAAAAGAAGAGGAATTACTGGAAGATCACCAAGATAATTTGTGCTCACCTGACACTTCAAACAAGTCTGCTAAGAATGGTGGGCAGAGTTTGTCACCTTGTAAAAATAGCCAATCCATATGCAATAGAGAACCACAGAATGGCGCTGAACCACAGGAAGCAAAATGGGATCTTTGGAAAACTTTGAATTATTTAGCAGAGGCTGCAAGTAGGAGTAAGCCTTTTAAGTCTAATGTGCAAGCGTCTGATGCTAAACTAGAATCTATGAAAATGACTGATAGTGATGCTAAAGTGCTGAAAGCCAAAATTAAGGAAAAGAAGCGCAAGGCAAAAGTTGAAGAAGAAAAGATTAGCACTGATCATGCCTCTTCAGATACATCAAAACCCAACAAATTGCGAAGAGTTCGCCAAAAAAAGGAACCTGTTTTTGGAGAATCTAGAATATCACCTCAGGCTGTTCTGGATGCTACCGACAGAAATCTCTTATGGAATGATTCAATTTGGTTCTCCTTAGCAGCTTCTGAAAACCAGGAAGGAGATGCACCTTTACCACAAATTCCTTCAAATTATGTAAGAATAAAGAACGGAAGCATACCTGTTTCCTTTATCCAAAAATTATTAATGAAGAAACTAGGCCTGAAAAGTGAGGATGAGGTTGAGATTAAATGCATGGGACATCCAGTGCTTCCTTCACTGCAGGTGCAAAATTTGGTTGACCTGTGGGGGGTTGATACAGCGTCTTTGGGACATAGAATTTCAGCAACCATTGGATCCTCAGGGAAAGATTTTGTCTTGATCCTAACCTATGGTCGGAAGGTCCTGCACCCTTGA 1386 0.4055 MVVIAQPMILRIKSSPIHTWLHYLGDCSEEVDVNLHAVIGGFIYTWVKDVDDDDEEFLKEATAISLCLHTFCRKCIYDKITDEELENCPVCNIDLGIVPLEKMRPDNILQDLRNKIFPFKKRKEKAPVSVSSVLLPARRKERSLSSLVVSTPRVCTQSTMTGRRTKPARKASGLQGSSLSIEKFIKKEEELLEDHQDNLCSPDTSNKSAKNGGQSLSPCKNSQSICNREPQNGAEPQEAKWDLWKTLNYLAEAASRSKPFKSNVQASDAKLESMKMTDSDAKVLKAKIKEKKRKAKVEEEKISTDHASSDTSKPNKLRRVRQKKEPVFGESRISPQAVLDATDRNLLWNDSIWFSLAASENQEGDAPLPQIPSNYVRIKNGSIPVSFIQKLLMKKLGLKSEDEVEIKCMGHPVLPSLQVQNLVDLWGVDTASLGHRISATIGSSGKDFVLILTYGRKVLHP 461
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma02g01291 461 ProSitePatterns Zinc finger RING-type signature. 67 76 IPR017907 -
Gma02g01291 461 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 55 133 IPR013083 -
Gma02g01291 461 ProSiteProfiles Zinc finger RING-type profile. 67 92 IPR001841 -
Gma02g01291 461 SUPERFAMILY RING/U-box 60 98 - -
Gma02g01291 461 Pfam Zinc finger, C3HC4 type (RING finger) 56 91 - -
Gma02g01291 461 Coils Coil 281 301 - -
Gma02g01291 461 MobiDBLite consensus disorder prediction 293 328 - -
Gma02g01291 461 PANTHER E3 UBIQUITIN PROTEIN LIGASE DRIP1 57 457 IPR044807 GO:0004842
Gma02g01291 461 MobiDBLite consensus disorder prediction 156 175 - -
Gma02g01291 461 MobiDBLite consensus disorder prediction 197 237 - -
Gma02g01291 461 PANTHER E3 UBIQUITIN PROTEIN LIGASE DRIP1 57 457 - -
Gma02g01291 461 MobiDBLite consensus disorder prediction 198 231 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma02g01291 Gma-Chr2 14998554 15005478 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma02g01291 55 379 C3H Transcription Factor Family AT2G30580 49.235 5.66e-89 273
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma02g01291 K16277 - gmx:100777543 771.541
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma02g01291 02 14998554 15005478 Gma10g01603 10 43114389 43119747 ECH
Gma02g01291 02 14998554 15005478 Gma02g01291 02 14998554 15005478 ECH
Gma10g00310 10 2862018 2868521 Gma02g01291 02 14998554 15005478 GST
Gma19g01528 19 44619527 44624921 Gma02g01291 02 14998554 15005478 PCT
Gma03g01468 03 40911465 40916731 Gma02g01291 02 14998554 15005478 PCT
Gma02g01291 02 14998554 15005478 Gma19g01528 19 44619527 44624921 PCT
Gma02g01291 02 14998554 15005478 Gma03g01468 03 40911465 40916731 PCT