Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma02g01279 ATGGAATTCCCCAAGAAGCGCAAAACCCAAGAGAACGGCGACACCACCACCGACTCTCCGCCGCCGCAATCCACCGAAGAAGCCCCCCTCGCCGCCGCAACCCCGGCCCCCGCCTCCCCCCTCGCATCTGAAGACATCCGCAAGATCCTGCAACCGTTCTCCCAGGAACAGCTCCTCGACCTACTCCAGTCGGCGTCGCTCCGCCACCCCGACGTCCTCGACGCCGTGCGCGCCGTCGCGGACTGCGACTCGACCCTCCGGAAGCTCTTCGTTCGCGGACTCGCCGGCGAGACCACGACGGAGACGCTCCGCAGCGTGTTCTCGGGGTTCGGCGAATTGGACGAGGCTATCGTGATCATGGACAAGGCCACCGGAAGGTCCAAGGGCTACGGCTTCGTCGTGTTCCGCCATGTGGACGGCGCAATTCTCGCCCTCAAGGACCCCAGCAAGAAGATCGACGGCCGCATGACAGTCACGCAGCTCGCCGCCGCCGGTGGTCCCGGCGGCGGTGACGTGTCGCTCCGCAAGGTCTTCGTCGGGAACGTCCCCTTCGAGATTTCCTCGGAGAGGCTCCTCGACGAGTTCCTCAAGTTCGGAGAAGTCGAGGAAGGGCCTCTAGGGTTTGACAAATCGAGTGGCAAAAGCAGAGGCTTTGCCTTCTTCGTTTACAAGACCGAGGAAGGTGCAAGGGCTTCGTTGGTTGAACCTTTGAAAACTATTGAAGGGCACCAAGTGATTTGCAAATTGGCTGTGGATAACAAAAAGACGAAACCTTTTggaacggatcagcatcaacatcagcagcaacatccgcagcaacagatgcagcagcaagtttctatgatggtgcctcagtatggtggatatggtggtaatggttatgggatgcagcagcagcagcatcagGTGCCACCGTATAATAACCAAGTTCCGGTTGCCGGTGGTGGTGGGTATGGCCATCGATATGGCAATTCGCAGATGGCTGGGCCGGTATCTGGTGACTATGGTGCGAGGGTGCCTCCCAATTCTGGTGGGGGTTACCCTGATGGCTCGCAGTATGGCTTCCCTCCTTCGTCGGGGCATCCGCCGCAGCCGCGGGTTCCGATGGCGAGACCTCCTGGTGGAATGTACCAAGGCGCACCACCCTATTATTGA 1155 0.5385 MEFPKKRKTQENGDTTTDSPPPQSTEEAPLAAATPAPASPLASEDIRKILQPFSQEQLLDLLQSASLRHPDVLDAVRAVADCDSTLRKLFVRGLAGETTTETLRSVFSGFGELDEAIVIMDKATGRSKGYGFVVFRHVDGAILALKDPSKKIDGRMTVTQLAAAGGPGGGDVSLRKVFVGNVPFEISSERLLDEFLKFGEVEEGPLGFDKSSGKSRGFAFFVYKTEEGARASLVEPLKTIEGHQVICKLAVDNKKTKPFGTDQHQHQQQHPQQQMQQQVSMMVPQYGGYGGNGYGMQQQQHQVPPYNNQVPVAGGGGYGHRYGNSQMAGPVSGDYGARVPPNSGGGYPDGSQYGFPPSSGHPPQPRVPMARPPGGMYQGAPPYY 384
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma02g01279 384 MobiDBLite consensus disorder prediction 1 40 - -
Gma02g01279 384 CDD RRM_RBM24_RBM38_like 87 161 - -
Gma02g01279 384 SUPERFAMILY RNA-binding domain, RBD 86 167 IPR035979 GO:0003676
Gma02g01279 384 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 175 257 IPR000504 GO:0003723
Gma02g01279 384 MobiDBLite consensus disorder prediction 317 384 - -
Gma02g01279 384 Gene3D - 4 171 IPR012677 -
Gma02g01279 384 SMART rrm1_1 88 160 IPR000504 GO:0003723
Gma02g01279 384 SMART rrm1_1 176 248 IPR000504 GO:0003723
Gma02g01279 384 SUPERFAMILY RNA-binding domain, RBD 171 261 IPR035979 GO:0003676
Gma02g01279 384 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 177 234 IPR000504 GO:0003723
Gma02g01279 384 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 89 155 IPR000504 GO:0003723
Gma02g01279 384 PANTHER GEO13361P1-RELATED 1 356 - -
Gma02g01279 384 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 87 164 IPR000504 GO:0003723
Gma02g01279 384 Gene3D - 172 303 IPR012677 -
Gma02g01279 384 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 1 356 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma02g01279 Gma-Chr2 14886766 14889056 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma02g01279 171 348 C2H2 Transcription Factor Family AT2G19380 27.179 3.49e-12 65.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma02g01279 K12741 - gmx:100816590 679.093
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma07g01993 07 41315640 41322226 Gma02g01279 02 14886766 14889056 GST