Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma02g01248 ATGGAACCACAAAGATTCTCTACTATTCTCGTATCGGAGTTGTTGGAAGAGGATGATGAGAGTGTGACCCTTATGCCTGGTGATATTTTCAAATTCAGCGTTCATGTTTACTATCGCCCTATCAATCCAGGTACTCGGATCCGAGGAAGCTTAGTTCACCGCTCTCCTTCTCGATGCATACCCTGCCACAATTTCTTCCAAGAGGGGAGAGAATTCTTTAGGAGAATGTTGTGGCGCGTACCCCTCTATGTGGAATCTCCTGAGGATATAATAGAAAACCTCATGTCTACCATCGGAGAACGGTTCTTGCATGTTGATGCCGCTGCTTCTCCTTCTCCTCCTCCTCCTTCTTCAGAATCTCCACACCGAGAGATTCCTTTCGAATTGACCATTCTCATATTAGATACTTTTAATCTCGAACTGCATGCAGCTTTGGTGGAAGAGTCTATGCTGAGTTTCAAAATGATCCCAGCATCTAACGAAGCCATCGAAACGTTGTTGAAGAAATCTACGGTTATGACACGGAGCGAGAGTCCTTGTTCTATCTGCTTGGAAGATTTGGAAATCAATGATGAGTGCGGCACAATGCCATGCAAGCATGTGTTTCATTCACAGTGTATTGTGACCTGGCTGCAAACAAGTCATATGTGTGCCTTGTGTCGCTACCCTTTGCCGTTTAAAAAAGATTGTGATTGA 696 0.444 MEPQRFSTILVSELLEEDDESVTLMPGDIFKFSVHVYYRPINPGTRIRGSLVHRSPSRCIPCHNFFQEGREFFRRMLWRVPLYVESPEDIIENLMSTIGERFLHVDAAASPSPPPPSSESPHREIPFELTILILDTFNLELHAALVEESMLSFKMIPASNEAIETLLKKSTVMTRSESPCSICLEDLEINDECGTMPCKHVFHSQCIVTWLQTSHMCALCRYPLPFKKDCD 231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma02g01248 231 SMART ring_2 180 220 IPR001841 -
Gma02g01248 231 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 146 226 IPR013083 -
Gma02g01248 231 Pfam Ring finger domain 180 221 IPR001841 -
Gma02g01248 231 SUPERFAMILY RING/U-box 172 227 - -
Gma02g01248 231 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 150 226 - -
Gma02g01248 231 SMART ringv_2 179 221 IPR011016 GO:0008270
Gma02g01248 231 ProSiteProfiles Zinc finger RING-type profile. 180 221 IPR001841 -
Gma02g01248 231 PANTHER F6A14.12 PROTEIN-RELATED 150 226 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma02g01248 Gma-Chr2 14501958 14502653 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma02g01248 141 225 C3H Transcription Factor Family AT1G18760 36.047 3.84e-13 64.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma02g01248 - - gmx:102660303 449.129