Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma02g01230 ATGGCTCAACCCAGTTCCAACGGGGATCTGAATAATAACcagcagcagggtcaggttcagcaacaacagcagcagggtcagtgggcggcggcggcgcagccgcatcagtatcagcagcaATGGATGGCTATGCAGTACCCGGCCACCGCCATGGCCATGATGCAGCAACAGATGTTGATGTACCCGCAGCATTATATGCCCTATGCTCACCCTCATTACCCGCCGCCGCCGCCGCCTCCTCCCTCCTCCCACCACCACCACCACCACAAACAGGCCGCGGCCTCCTCCGACGAGATCAGGACCGTCTGGCTCGGCGACCTCCACCATTGGATGGACGAGAACTACCTCCACAACTGCTTTGCTCACACCGGCGAGGTTGTTTCGGCCAAGGTCATTCGGAATAAGCAAACTGGTCAGTCCGAGGGATATGGATTCGTGGAGTTCTATTCGCGAGGGACGGCTGAGAAAGTCTTGCAGAACTATAATGGCACGATGATGCCCAATACAGATCAGGCATTCCGTCTGAATTGGGCCACATTCAGTGCCGGGGAAAGACGTTCCTCCGATGCTACTTCGGATCTCTCTATATTTGTTGGGGACTTGGCCATTGATGTTACCGATGCTATGCTGCAGGATACTTTTGCTGGCCGATATTCGTCTATTAAGGGAGCAAAAGTTGTCATTGATTCTAATACTGGCCGCTCAAAAGGCTATGGTTTTGTTAGGTTTGGTGATGAAAACGAGAGAACGAGGGCAATGACCGAAATGAATGGCGTTTATTGTTCTAGTAGGCCCATGCGAATAGGTGTTGCAACTCCCAAGAAAACTTATGGCTTCCAACAACAATATTCTTCTCAAGCTGTGGTATTGGCTGGGGGACACTCAGCTAATGGTGCTGTGGCCCAAGGTTCCCATTCTGAAGGGGATATAaacaacactactatatttgttggagggcttgattctgataccagtgatgaggatctcagacaaccatttttgcaatttggtgaggttgtctctgtgaaaattccagttggtaaagggtgtggatttgttcaatttgctgacagAAAGAATGCTGAGGAAGCAATTCAGGGATTGAATGGGACAGTAATTGGGAAGCAGACAGTGCGTCTTTCTTGGGGTCGCAGTCCAGGAAATAAGCATTGGAGATCTGATTCCAATGGAGGCCATTATGGTGGTCATCAGGGTTATGGTGGCCATGGATTTGCTGTGAGACAGAATCAGGATATAGCCATGCAACCTGCTGCTGCAATTCAAGGTGCTTCCTAA 1296 0.4174 MAQPSSNGDLNNNQQQGQVQQQQQQGQWAAAAQPHQYQQQWMAMQYPATAMAMMQQQMLMYPQHYMPYAHPHYPPPPPPPPSSHHHHHHKQAAASSDEIRTVWLGDLHHWMDENYLHNCFAHTGEVVSAKVIRNKQTGQSEGYGFVEFYSRGTAEKVLQNYNGTMMPNTDQAFRLNWATFSAGERRSSDATSDLSIFVGDLAIDVTDAMLQDTFAGRYSSIKGAKVVIDSNTGRSKGYGFVRFGDENERTRAMTEMNGVYCSSRPMRIGVATPKKTYGFQQQYSSQAVVLAGGHSANGAVAQGSHSEGDINNTTIFVGGLDSDTSDEDLRQPFLQFGEVVSVKIPVGKGCGFVQFADRKNAEEAIQGLNGTVIGKQTVRLSWGRSPGNKHWRSDSNGGHYGGHQGYGGHGFAVRQNQDIAMQPAAAIQGAS 431
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma02g01230 431 SMART rrm1_1 195 269 IPR000504 GO:0003723
Gma02g01230 431 SMART rrm1_1 101 176 IPR000504 GO:0003723
Gma02g01230 431 SMART rrm1_1 314 381 IPR000504 GO:0003723
Gma02g01230 431 MobiDBLite consensus disorder prediction 71 96 - -
Gma02g01230 431 SUPERFAMILY RNA-binding domain, RBD 304 410 IPR035979 GO:0003676
Gma02g01230 431 Gene3D - 180 286 IPR012677 -
Gma02g01230 431 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 194 273 IPR000504 GO:0003723
Gma02g01230 431 Gene3D - 99 179 IPR012677 -
Gma02g01230 431 SUPERFAMILY RNA-binding domain, RBD 191 289 IPR035979 GO:0003676
Gma02g01230 431 CDD RRM1_SECp43_like 101 181 - -
Gma02g01230 431 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 196 265 IPR000504 GO:0003723
Gma02g01230 431 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 315 378 IPR000504 GO:0003723
Gma02g01230 431 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 102 169 IPR000504 GO:0003723
Gma02g01230 431 PANTHER POLYADENYLATE-BINDING PROTEIN RBP47B 27 430 - -
Gma02g01230 431 SUPERFAMILY RNA-binding domain, RBD 69 181 IPR035979 GO:0003676
Gma02g01230 431 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 27 430 - -
Gma02g01230 431 Gene3D - 294 417 IPR012677 -
Gma02g01230 431 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 100 180 IPR000504 GO:0003723
Gma02g01230 431 CDD RRM2_SECp43_like 193 272 - -
Gma02g01230 431 MobiDBLite consensus disorder prediction 1 27 - -
Gma02g01230 431 CDD RRM3_NGR1_NAM8_like 312 383 - -
Gma02g01230 431 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 313 385 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma02g01230 Gma-Chr2 14267410 14272031 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma02g01230 87 392 Eukaryotic Initiation Factors Gene Family AT4G34110 29.073 2.78e-29 118
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma02g01230 - - gmx:100798089 723.391