Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma02g01175 ATGCCTCCAAGCTTCAACACACTAGACTACTCTCTAGACCAACAACAACATCATCATTTGTACGCACCAAATCAACACCAACAACACCTGATGATGAAGTTCCAACAAGGTTCTGGTGATGAAAACAACAATATTGGATCAATGGTGGATTACATGCCTCAAACAACAACAACACTACCCCCACATGGTTTTTATGGTACTGCTACCAGTGCTGCCACAACATCCTATGACAAACTCAGTTTTGCAGATGTGATGCAGTTTGCAGATTTTGGACCGAAGTTGGCTTTGAACCAAGCAAAAAGCTGTGAAGAATCTGCAATAGACCCGGTTTATTTTCTTAAGTTTCCCGTGTTGAACGACAAGATGgaggaggatcatcagcagaacatgatggtgaataatgatgaccctgatggtgatgaagcagaaaatcatcatcatcTTGATGAGAGGTTCAATTTGGTGAGTGTGGAAGGCAAAGATCAGGGAATGATGATGAGAGAAGATGAAGAGACAACTCGTGTTTCCGACGACAACAACAACTCGGTGCAGATTCGGTTTCTTGGACACGAAGAGCCTCAGCAGAAGAATTGTGCAGTGCAGGAGAACAAGAACGGCAAGAAGAAGAGACCAAGAACTGTTAAGACGAGTGAGGAGGTTGAGAGCCAGCGCATGACTCATATAGCGGTTGAAAGGAACCGTAGGAAGCAAATGAATGAGCATCTTCGTGTCCTTAGATCCCTCATGCCTGGTTCATACGTCCAAAGGGGTGATCAAGCTTCTATAATTGGAGGGGCTATAGAGTTTGTGAGGGAATTGGAGCAACTTCTTCAATGTTTGGAGTCACAAAAGAGGAGGAGGCTACTTGGAGAAGCTCAAGCAAGACAAGTTGGGGATCCCTCTCTTGTGGCACAACAACAACAACAGCCTCCATTCTTTCCAACTTTGCCTATTCCAAACGAGCAGATGAAGCTTGTGGAGATGGAGACTGGCCTCCGCGAAGAAACCGCAGAGTGCAAGTCTTGTTTGGCCGATGTTGAAGTGAAGCTTCTAGGATTTGATGCCATGATCAAAATCCTATCAAGGAGGAGGCCAGGACAGTTGATCAAGACCATTGCTGCACTTGAAGATCTACAACTTATCATCCTTCACACCAACATCACCACCATTGAACAAACAGTTCTTTATTCATTCAATGTCAAGGTGGCTAGTGATTCAAGGTTCACCGCAGAAGATATAGCCAGCTCCGTCCAGCAGATATTCAATTTTATTCATGCAAACACTAGCATGTGA 1293 0.4192 MPPSFNTLDYSLDQQQHHHLYAPNQHQQHLMMKFQQGSGDENNNIGSMVDYMPQTTTTLPPHGFYGTATSAATTSYDKLSFADVMQFADFGPKLALNQAKSCEESAIDPVYFLKFPVLNDKMEEDHQQNMMVNNDDPDGDEAENHHHLDERFNLVSVEGKDQGMMMREDEETTRVSDDNNNSVQIRFLGHEEPQQKNCAVQENKNGKKKRPRTVKTSEEVESQRMTHIAVERNRRKQMNEHLRVLRSLMPGSYVQRGDQASIIGGAIEFVRELEQLLQCLESQKRRRLLGEAQARQVGDPSLVAQQQQQPPFFPTLPIPNEQMKLVEMETGLREETAECKSCLADVEVKLLGFDAMIKILSRRRPGQLIKTIAALEDLQLIILHTNITTIEQTVLYSFNVKVASDSRFTAEDIASSVQQIFNFIHANTSM 430
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma02g01175 430 MobiDBLite consensus disorder prediction 202 225 - -
Gma02g01175 430 MobiDBLite consensus disorder prediction 196 225 - -
Gma02g01175 430 SMART finulus 228 279 IPR011598 GO:0046983
Gma02g01175 430 PANTHER TRANSCRIPTION FACTOR FAMA 26 430 - -
Gma02g01175 430 CDD bHLH_AtFAMA_like 225 292 - -
Gma02g01175 430 CDD ACT_UUR-ACR-like 356 420 - -
Gma02g01175 430 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 222 288 IPR036638 GO:0046983
Gma02g01175 430 Pfam Helix-loop-helix DNA-binding domain 223 274 IPR011598 GO:0046983
Gma02g01175 430 Gene3D - 214 288 IPR036638 GO:0046983
Gma02g01175 430 PANTHER TRANSCRIPTION FACTOR FAMA 26 430 IPR044283 GO:0003700|GO:0010052
Gma02g01175 430 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 222 273 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma02g01175 Gma-Chr2 13210092 13212144 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma02g01175 36 430 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G24140 58.531 3.93e-147 422
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gma02g01175 HLH 9.3e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma02g01175 - - gmx:100793349 831.247