Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma02g01100 ATGGAATCTTGGAGTTATGTCCCCGAAGAGAAAGGCTATTTGTTTTCTGATGAAATGGATTTTTCACTTGATGCTTTCATGAGAAGTAGAAAAGCATTGGTTGAATGGGACAACAAATCCAACTTTGTTGAGAAAGATGGATTTAATTCAGACAGAGAGGTAGTTAGAAGCATGGAATTTGTGGATTTGGGATTCCCTGACTTGTTGCAAAAGTCTTTTCATGGAAGCCAGCCTCTAGAGACATCTAGCTATGAACTAGATAGTAATAATTCTAGTAAAAGAGGGAATTCCTCCCCACATGTCATTGCCTTGGATTCTTCTATGGGGGAAGAGGAATCCGATTCAAAGCATTTGAGTTCTCTAGTTGAATCCAAGACTCATGATTCTTCACTGATTGATCTGAAGCTAGGGAGATTAGCAGATTGTAAAGGTGCAAGTAGTGATAAAGTTGCAAAAGAAGGGTTCACTTTAACATCTATACATCCGACCACACTTTGGAAGAGAGCTCGCACTTCCAGCTTGCCTGCACAGGCTCCTGTATGTCAAGTTTATGGTTGTAACATGGATCTTAGCTCCTCAAAAGATTACCACAAAAGGCATAAAGTTTGTGATGCTCACTCCAAAACAGCTAAAGTTATTGTAAATGGAATTGAACAGAGGTTTTGTCAGCAGTGCAGCAGGTTTCATTTGCTAGCTGAGTTCGATGATGGTAAGCGCAGTTGTCGCAGGCGTCTAGCAGGACACAATGAACGCCGAAGGAAACCCCAATTTGATTACGTGACTGGTAAACAGCACAAGATTCTTCAGTCATATCAAGGTACTAAGTATCTGGGGTCTTCATTACAGAATAAACCCCAGTTTCCCTTTCAAGACATATTTCAAAGCAGCATCCTTTTCCCCGGAAAGCATGCTCAATTCTCTCAGAGTGGACGTGTCAAACTGGAAGAGGACTCGATTTACGGTTCCCAACTTGCTGCACCGGTCACACTTGATCAGGAATCATCAAGCTGTGCTCTCTCTCTTCTGTCAGATCAGTCACAGTATCCGTCATGCCACGCAGCAGGCAATCCATTAGCCAGTCCCCAAGTCTTTAGTGGCATCCGCATACCCGACAGAGACAGCCGAGTTTCCAAAAAGCCTTTGAGGATAAGCCCTGCAGATAAACTTGCACCAAATGAGTCCTTTCCATGTGATACAATCTCCAAGGAAGTTATCAAGAATAGATCCGCCGCAACATTTTCCAGTGTTGGTCATGCTCTTGAAGTCCATAATGGAGATGATATCTGCCAACCATCAGAGTTGTTCAGCATTAAACACAGTCTTTCCTCGGAACATGCAGCCACGGTTGATTTGTTCCAATTGTCTTCACATCTTCAGAGGGTGGAGCAGCAAAGAAATTCTGTTTTGGTGAAGTGGGAAAATGAGGACTACTGTTTCCCAACTGTGTGA 1449 0.43 MESWSYVPEEKGYLFSDEMDFSLDAFMRSRKALVEWDNKSNFVEKDGFNSDREVVRSMEFVDLGFPDLLQKSFHGSQPLETSSYELDSNNSSKRGNSSPHVIALDSSMGEEESDSKHLSSLVESKTHDSSLIDLKLGRLADCKGASSDKVAKEGFTLTSIHPTTLWKRARTSSLPAQAPVCQVYGCNMDLSSSKDYHKRHKVCDAHSKTAKVIVNGIEQRFCQQCSRFHLLAEFDDGKRSCRRRLAGHNERRRKPQFDYVTGKQHKILQSYQGTKYLGSSLQNKPQFPFQDIFQSSILFPGKHAQFSQSGRVKLEEDSIYGSQLAAPVTLDQESSSCALSLLSDQSQYPSCHAAGNPLASPQVFSGIRIPDRDSRVSKKPLRISPADKLAPNESFPCDTISKEVIKNRSAATFSSVGHALEVHNGDDICQPSELFSIKHSLSSEHAATVDLFQLSSHLQRVEQQRNSVLVKWENEDYCFPTV 482
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma02g01100 482 Gene3D - 172 242 IPR036893 GO:0003677|GO:0005634
Gma02g01100 482 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 333 481 IPR044817 GO:0003677
Gma02g01100 482 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 44 323 IPR044817 GO:0003677
Gma02g01100 482 MobiDBLite consensus disorder prediction 80 120 - -
Gma02g01100 482 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 333 481 - -
Gma02g01100 482 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 44 323 - -
Gma02g01100 482 MobiDBLite consensus disorder prediction 80 103 - -
Gma02g01100 482 ProSiteProfiles Zinc finger SBP-type profile. 178 255 IPR004333 GO:0003677
Gma02g01100 482 Pfam SBP domain 181 254 IPR004333 GO:0003677
Gma02g01100 482 SUPERFAMILY SBT domain 179 260 IPR036893 GO:0003677|GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma02g01100 Gma-Chr2 11997753 12004220 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma02g01100 95 480 SBP-box Gene Family AT1G69170 38.734 6.10e-65 213
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Gma02g01100 SBP 1e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma02g01100 - - gmx:100820149 973.385
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma02g01100 02 11997753 12004220 Gma02g01100 02 11997753 12004220 ECH
Gma01g00337 01 4012892 4014373 Gma02g01100 02 11997753 12004220 GST
Gma01g00593 01 9254799 9260665 Gma02g01100 02 11997753 12004220 GST