Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma02g01068 ATGCAACTAACTCCAGAGGGTAGTGTCCACAGAACCATACGAGTGTTTCTCGGATTCAGAAAAAGAGCTATGTTGCCCTCAGTCTTTGCTCTCACCAAAAAACAACACCAACCCAATTCAGAGCCTTCTCCAAAGTCCCCAACTTTACTCTCTTCTTCCCAACTTTCCACTCTCCAAACCACCCTCCAAAACTCCCTCACAAGAAGCAACACTGATGAGGCATGGAAATCCTTCAAAACCCTCACCACTCACCACTCCTTCCCTCCCAAAACCCTAACCAATTCCCTCCTCATCCACCTCTCCTCCCTTGGTGACACCCTCAACCTCAAGAGGGCCTTTGCCTCCACCCTCTTCCTCATGGAGAAGAACCCCATGCTCATTGACCATCATACCCTCCATCAAATCTTGCTCTCCATGAGGGATGCCAACACTGCTGCACCAGCCTTTGCACTTGTCAGGTGCATGTTCAGGAACAGGCTCTTTGTGCCCTTCCATGTGTGGGGCCCTGTGCTGGTTGAGATCAGTAGGAAGAACAATGGTGGCGGCCTTGGTGGTGCTTTTTTGAGGGTCTTTGAGGAGAATTGTTGGGTGGCTCTTGAGGAGAGGATTGAGTTCATGAAGCCTGATGTTGGTGCTTGCAATGCAGCTCTGGAAGGTTGCTGCTGTGAGCTTGAGTCTGTGAGTGATGCTGAGAGGGTTGTTGGGACGATGTCAAATCTAGGGATTAGGCCTGATGAGTTCAGTTTCGGGTTTCTTGGGTATTTGTATGCACTCAAGGGGTTGGAAGAAAAGATAAGGGAGTTGGAGGTTTTGATGGGTGGGTTTGGTTGTTTGAACAAGAAGTGGTTCTATTGTAGTTTGATTAGTGGGTATATTAAGTCAGGGGATTTGGCTTCTGTGGAGGCAACTGTTGTTAAATGTCTTGGTGATGGAGGTGGTGGGAAGGATTGGGGTTTTGGTGTTGAAACTTTCTGTGAAGTGGTTAAGGCTTATTTTCAGAAGGGAAATATCAAGGGGTTGGCTAGTTTGATTGTTGAAGCTCAGAAGTTAGAGGGTTCGGATATTATGATTGATAAGTCTATAGGGTATGGTATTGTTAATGCGTGTGTTAATATTGGACTATCTGATAAAGCACACAGCATTCTTGATGAGATGAATGCTCTGGGGGCTTCTGTGGGTCTTGGGGTCTATATACCTATCTTGAAGGCTTACTGCAAAGAAAATAGAACTGCTGAGGCTACTCAAATGGTGATGGAGATTAGTAATTCGGGTCTTCAGTTGGATGTGGGAACCTATGATGCTTTGGTAGAAGCAGCCATGTGTGCCCAGGATTTTCAGTCAGCGTTTTCCCTGTTCAGGGACATGAGAGATGCAAGGATTCCTGATTTGAAAGGGAGTTACTTAACTATAATGACAGGTTTGATGGAGAATCATCGGCCTGAGTTGATGGCAGCTTTCTTAGATGAGGTGGTTGAGGATCCTAGGATTGAGGTAGGTACTCATGATTGGAATTCCATCATCCATGCTTTCTGTAAAGCTGGGAGACTAGAAGATGCAAGAAGGACTTTCAGAAGGATGATGTTCCTGCAGTTTGAGCCAAATGATCAGACATACTTGTCCATGATTAATGGATATGTCTTGGCAGAGAAATATTTTCTTGTGCTGATGTTGTGGAACGAGGTTAAGCGAAAGCTATCTTTGGATGGGCAGAAGGGGATCAAGTTTGACCACAATTTGGTTGATGCATTCCTGTATGCTATGGTCAAGGGAGGTTTCTTTGATGCTGTTATGCAAGTTGTGGAGAAAGCTTATGAGATGAGAGTATTTGTTGATAAGTGGAGATACAAGCAAGCATTCATGGAGACTCATAAAAAGCTCAAAGTGGCGAAGTTAAGGAAAAGGAATTTTAGAAAAATGGAAGCGCTTATTGCTTTCAAGAACTGGGCTGGCTTAAATGCATGA 1962 0.4495 MQLTPEGSVHRTIRVFLGFRKRAMLPSVFALTKKQHQPNSEPSPKSPTLLSSSQLSTLQTTLQNSLTRSNTDEAWKSFKTLTTHHSFPPKTLTNSLLIHLSSLGDTLNLKRAFASTLFLMEKNPMLIDHHTLHQILLSMRDANTAAPAFALVRCMFRNRLFVPFHVWGPVLVEISRKNNGGGLGGAFLRVFEENCWVALEERIEFMKPDVGACNAALEGCCCELESVSDAERVVGTMSNLGIRPDEFSFGFLGYLYALKGLEEKIRELEVLMGGFGCLNKKWFYCSLISGYIKSGDLASVEATVVKCLGDGGGGKDWGFGVETFCEVVKAYFQKGNIKGLASLIVEAQKLEGSDIMIDKSIGYGIVNACVNIGLSDKAHSILDEMNALGASVGLGVYIPILKAYCKENRTAEATQMVMEISNSGLQLDVGTYDALVEAAMCAQDFQSAFSLFRDMRDARIPDLKGSYLTIMTGLMENHRPELMAAFLDEVVEDPRIEVGTHDWNSIIHAFCKAGRLEDARRTFRRMMFLQFEPNDQTYLSMINGYVLAEKYFLVLMLWNEVKRKLSLDGQKGIKFDHNLVDAFLYAMVKGGFFDAVMQVVEKAYEMRVFVDKWRYKQAFMETHKKLKVAKLRKRNFRKMEALIAFKNWAGLNA 653
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma02g01068 653 Pfam Pentatricopeptide repeat domain 417 460 IPR002885 -
Gma02g01068 653 Pfam PPR repeat family 503 545 IPR002885 -
Gma02g01068 653 TIGRFAM PPR: pentatricopeptide repeat domain 503 534 IPR002885 -
Gma02g01068 653 MobiDBLite consensus disorder prediction 32 54 - -
Gma02g01068 653 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 499 533 IPR002885 -
Gma02g01068 653 PANTHER OS01G0788900 PROTEIN 25 653 - -
Gma02g01068 653 Gene3D Tetratricopeptide repeat domain 54 351 IPR011990 GO:0005515
Gma02g01068 653 PANTHER BNAC05G43320D PROTEIN 25 653 - -
Gma02g01068 653 Pfam PPR repeat 366 387 IPR002885 -
Gma02g01068 653 Gene3D Tetratricopeptide repeat domain 462 616 IPR011990 GO:0005515
Gma02g01068 653 Gene3D Tetratricopeptide repeat domain 352 461 IPR011990 GO:0005515
Gma02g01068 653 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 209 244 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma02g01068 Gma-Chr2 11600750 11602931 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma02g01068 206 605 Glycosyltransferase AT1G05670 19.753 2.83e-12 68.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma02g01068 - - gmx:100811600 1213.36
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma02g01068 02 11600750 11602931 Gma02g01068 02 11600750 11602931 ECH