Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma02g01008 ATGGGAAGGTCACCATGCTGTGAGAAGACAGGGCTAAAGAAAGGGCCATGGACACCGGAGGAAGACCAAAAGCTCATTGCTTTCATCGAAAAGCATGGCCATGGAAGCTGGCGTGCATTGCCTGCAAAAGCTGGGCTTAGAAGATGTGGAAAGAGTTGCAGACTTAGATGGTCGAATTATCTCCGACCTGATATAAAACGAGGAAAGTTCAGCTTGCAGGAAGAGCAAACCATTATTCAACTTCATGCCCTTCTAGGAAACAGGTGGTCAGCCATAGCATCTCACTTGCCCAAGAGAACAGACAATGAGATCAAGAACTACTGGAACACCCACCTCAAGAAGAGGCTGGACAAAATGGGCATAGACCCAACAACCCACAAGCCAAAAAATGAGTCCCTAGCCTACTCCAAAGACGGCTCGAACCTTGGCCACATGGCTCAGTGGGAGAGTGCTCGGCTCGAAGCCGAAGCCAGACTCGTAAGAGAATCCAAACTACAAGAACAACAAAACAACCTCGGACCTATGTCCTCTCCTTCCTCAACACAAATTACGAGGCTCGTTCTCAACAAAATCACACCCCTACAACAAAAACAACACTCACTACCACCGTGCCTCGACGTGCTCAAAGCGTGGCAAAGTTCATGGTCAAACAACAACAACAACATTAACAAATACTCATCACTAAACGACAAGAAGAAAACCATGCATGTGCGTAGCATGTATGCCATGATGCTTTCAAATGATGACCTAGAGTCTCCAACATCCACTTTGTGCTTCCCCGAGAGCGTGCAAATGAATAATAATAACAATAACTCTAACGCTATGGTCTCAACCAACCACCTTGGGTTAATCAATGAGAACTATTTACTCCCTCCAACCACCCTGGATGAGTTCATTATTACCAAAAGTTTAGGAACAACAAGTAGTGAGGGTGCAATTGAAACCGTGAATGGTGGTGGTAGTGACTCGTGGAGGTACTTCACCAAACACAACAATGAAGAAGAACAAGTTGAAACTGATGAGAAGACAATAATGTACGACACGATTTCATGTTTGCAAGACGATGACGGTGATATTATGGTGGCTGTTGAGGCATTAAGAGGTGCTGGTTATTATGATGATGATAATAATAGCAACAATAATAATGTCACATTTACGCATCTCTCTAGCAATGTCAATAATATGGTGGGTTTCGAAAACGATTTTGATTCCAATGAAGATTTAGCGGCGGTGAACTTGCATGTGAACTTCGAGGAGAATAAGGATTATTGGAATGGCATGCTTAATTAG 1290 0.4388 MGRSPCCEKTGLKKGPWTPEEDQKLIAFIEKHGHGSWRALPAKAGLRRCGKSCRLRWSNYLRPDIKRGKFSLQEEQTIIQLHALLGNRWSAIASHLPKRTDNEIKNYWNTHLKKRLDKMGIDPTTHKPKNESLAYSKDGSNLGHMAQWESARLEAEARLVRESKLQEQQNNLGPMSSPSSTQITRLVLNKITPLQQKQHSLPPCLDVLKAWQSSWSNNNNNINKYSSLNDKKKTMHVRSMYAMMLSNDDLESPTSTLCFPESVQMNNNNNNSNAMVSTNHLGLINENYLLPPTTLDEFIITKSLGTTSSEGAIETVNGGGSDSWRYFTKHNNEEEQVETDEKTIMYDTISCLQDDDGDIMVAVEALRGAGYYDDDNNSNNNNVTFTHLSSNVNNMVGFENDFDSNEDLAAVNLHVNFEENKDYWNGMLN 429
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma02g01008 429 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Gma02g01008 429 CDD SANT 69 112 IPR001005 -
Gma02g01008 429 CDD SANT 16 61 IPR001005 -
Gma02g01008 429 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Gma02g01008 429 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Gma02g01008 429 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 411 - -
Gma02g01008 429 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Gma02g01008 429 PANTHER MYB TRANSCRIPTION FACTOR MIXTA-LIKE PROTEIN 1 411 - -
Gma02g01008 429 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Gma02g01008 429 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Gma02g01008 429 SMART sant 13 63 IPR001005 -
Gma02g01008 429 SMART sant 66 114 IPR001005 -
Gma02g01008 429 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Gma02g01008 429 Gene3D - 69 138 - -
Gma02g01008 429 Gene3D - 11 67 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma02g01008 Gma-Chr2 10869593 10873704 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma02g01008 1 170 MYB Transcription Factor Family AT5G15310 82.759 3.01e-103 305
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Gma02g01008 Myb_DNA-binding 3.1e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma02g01008 K09422 - gmx:100792994 842.032
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma02g01008 02 10869593 10873704 Gma02g01008 02 10869593 10873704 ECH
Gma02g01008 02 10869593 10873704 Gma09g02165 09 47096266 47099870 ECH