Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma02g01006 atgggaaggatgccatgctgtgagaaggtaggtttgaagaaaggaccatggacacccgaagaagataagaagctcgttgcttatgttgaagagcacggccccggaaactggCGTTCAGTGCCTGCCAAAGCGGgtcttgaaagatgtggaaagagttgcagacttaggtggattaactacctcaagcctgatataaaacgaggaaacttcagcatggaggaagaccacaccattattcaacttcatgctcttcttggaaacaaATGGTCAATCATAGCAGCTCACTTGCCCAACAGAACAGACAATGAGATCAAGAACTATTGGAACACCAACATCAAGAAAAGACTCATCAGAATGGGCTTAGATCCCATTACTCACAAACCAATCAAATCCAACTCGTTTGAAGCCTATGATGAGTTCAAAGACACCACAAATATGGGCCACGTGGCTCAATGGGAGAGTGCTCGACTCGAAGCTGAAGCAAGAGGATCTATTTTGCAAGTTGGATCTGGCTCCTCAAATCTGCCTAGGTTAAACTTAAGCAAAATCCCAACTCAGCCTTGTTCTTCATCATATTCAATTTCAAATGAACACATGACAGCGTATAACATGTATGCCCTCGTGCTTGCAACGAATTACGACCTTCAATCATCGGTATCCACTTTGAGCGTTCCCAAGCTTCCTGAAGTCTGTACCATTATTGGAAAATTCGCCAACGCAGAAAGCTTACTCTCATATAAGAATGATGATAATGTCGTAGAAATCAGTAGCCAAATTCAAAAGGTGGTGGAAGGCAGTGTATCAAACTTGCAAGATGACGATATTATGATGGCTGTGGAAGCCTTTAGAACGGCAAAATGTGAAAGTATTCAAGAATTGTTTAATGAATCCGCTGTAGAGAAGGTCTAA 909 0.308 MGRMPCCEKVGLKKGPWTPEEDKKLVAYVEEHGPGNWRSVPAKAGLERCGKSCRLRWINYLKPDIKRGNFSMEEDHTIIQLHALLGNKWSIIAAHLPNRTDNEIKNYWNTNIKKRLIRMGLDPITHKPIKSNSFEAYDEFKDTTNMGHVAQWESARLEAEARGSILQVGSGSSNLPRLNLSKIPTQPCSSSYSISNEHMTAYNMYALVLATNYDLQSSVSTLSVPKLPEVCTIIGKFANAESLLSYKNDDNVVEISSQIQKVVEGSVSNLQDDDIMMAVEAFRTAKCESIQELFNESAVEKV 302
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma02g01006 302 CDD SANT 69 112 IPR001005 -
Gma02g01006 302 Gene3D - 69 116 - -
Gma02g01006 302 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 65 IPR017930 -
Gma02g01006 302 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Gma02g01006 302 CDD SANT 16 61 IPR001005 -
Gma02g01006 302 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 66 116 IPR017930 -
Gma02g01006 302 Gene3D - 13 66 - -
Gma02g01006 302 PANTHER TRANSCRIPTION FACTOR MYB106 1 227 - -
Gma02g01006 302 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 227 - -
Gma02g01006 302 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Gma02g01006 302 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Gma02g01006 302 Pfam Myb-like DNA-binding domain 67 110 IPR001005 -
Gma02g01006 302 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Gma02g01006 302 SMART sant 66 114 IPR001005 -
Gma02g01006 302 SMART sant 13 63 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma02g01006 Gma-Chr2 10808005 10809320 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma02g01006 1 162 MYB Transcription Factor Family AT5G15310 70.370 7.80e-89 263
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Gma02g01006 Myb_DNA-binding 3e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma02g01006 K09422 - gmx:100790887 615.15