Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma02g00984 ATGTTGAAAGTTGACGTAGTTGGGAACAAAAAAAGGAAGAGGTGTGGGAAGGTTTTCAGGTTCAAGAATTTTGGTGAACCTGGATACCCTGTTATGTTTAATGGGCCATTTCGTGAGAACGTGAATGCATTACTTGAATATGCAAATTTGGAGAGTAATTTAAGCATGGAAATGCCAATGTGGTCTTTTCAACTTGAAGTTCATCACCACCCACCTTTGCATATCTTGTTGTTTGTGATTGAAGAGCCAATAGAGGCAGCATTGAATCGTCACTGCAAGCATTGTCAATACGTTGGCTGGGGCAATCATTTCATTTGCAATAAGAAGTATCACTTTGTGTTGCCCTCAAAGGAGGCACTGGCTACCTGCACAAGCTGTGAAGGTTGCTGTGATGCAGTTACTACAATTAATAATGGTAAGTCCAAATTAATTGAATTACAGGGTCATATGATGCATGGTGTTTTTCACTCTAATGGATTCGGGCATTTGCTTTGTATCAATGGATTGGAAATGGGTTCGAATTTGGCTGGGAACCAGATCATGGAGTTTTGGAACCGTTTGTGCTACGGATTGCAAGCAAGGAAGGTGAGTTTGAATGACATTTCACAAAAGAGAGGAATGGAACTAAGACTTGTGAATGGAATAGCATACAACGAGTCATGGTTTGGCCATTGGGGTTACAAATTTGGTCGAGGATGCTTTGGTGTAACTCAATCCATGTACCACAAGGCCATACAAGCAATAAGAAGCATGCCATTATACTTAATCATACACCACATTGCCAATTCCAACCATGGCATTCCACTCATATTCTCAAGGTACCAAACACTTTCAGATCAATCCCTAGTGACCCTTGGTGACCTATTTTGTTACATGTTAGACCTTAAATCGCGCCTTCCTCGTGAAACATGCATTAGTTCCTATAACACAAATACCTTAGCAGTCGAGACCAATTGTCGTTGGTCCCCTAAAAGGATTGAGATGGCAACAAGGGTAATTGTTGAGGCCTTGAAAAGAACAAAGTTTAGATGGGTTTCAAGGCAAGAAGTTAGAGATGCTGCTCGTGCATACATTGGTGACACAGGATTGCTAGATTTTGTATTGAAGTCACTAGGGAACCATGTTGTAGGAAACTACTTGGTTCGTCGAAGCTTGAACCCTGTGACCAAAGTCTTGGAATATTGTTTAGAAGACATTTCTAATGTGCACCCTTATGATAATGAAGGCTTGGTTATGAGTAACAAAGTGAAGGACAAGTATAAGATCACAAGGGCTCAACTAATGAAGGACATGCTTTATTTGTATAAGTACATTCTTATAGATCCAAAACCAATGATGGGGTCAGAATTTCTCTCGGCTATACCATTGGCAGCAAGGATAATTCTTGATACCAAGTATTTTATAAAAGATTACTTTGGAGATATTCCTTACCAGGTTGAATTAGGCTCGAATGATAAACTCAACCTTTATTGTACAATTTGGTTGAGAAACAATGTTGGCAGTGATGAGTACTTAAACAAAGCCATTATGCCACCCCATGAATGTTTCACATTGAAAAGAAATGCTACTATCAATGACTTGAAGCTAGAAGTTGAAAGGAATTTTAGAGAAATTTATTGGGGGTTAAGGAGTTTTGTAGTGGAATCATTTCGGAATTTAAGTGTCAATAATGAGACAGAAATGGTTTTTGGTCTAATTGAAGTGGGTGGAAAAGTTGTGCTTGAGGGTTGGCAAGGTGACATAGGAATAAACATGATTGAGCAAATATGTGAAAGTGATCCGAACAATGGTATAATGGATTGCACTTGTGGAACTATAGAAGATGATGGTGAGAGGATGGTCTCGTGTGATATTTGTGAAATTTGGCAACATAGTAGGTGTGTTCGAATTCCAAATGATGAAGAAATTCCTCATATTTTTTTATGCAAAAAGTGCGAGCAAGAAATTGTCTTGTTTCCTTCGTTGCCATAG 1971 0.3896 MLKVDVVGNKKRKRCGKVFRFKNFGEPGYPVMFNGPFRENVNALLEYANLESNLSMEMPMWSFQLEVHHHPPLHILLFVIEEPIEAALNRHCKHCQYVGWGNHFICNKKYHFVLPSKEALATCTSCEGCCDAVTTINNGKSKLIELQGHMMHGVFHSNGFGHLLCINGLEMGSNLAGNQIMEFWNRLCYGLQARKVSLNDISQKRGMELRLVNGIAYNESWFGHWGYKFGRGCFGVTQSMYHKAIQAIRSMPLYLIIHHIANSNHGIPLIFSRYQTLSDQSLVTLGDLFCYMLDLKSRLPRETCISSYNTNTLAVETNCRWSPKRIEMATRVIVEALKRTKFRWVSRQEVRDAARAYIGDTGLLDFVLKSLGNHVVGNYLVRRSLNPVTKVLEYCLEDISNVHPYDNEGLVMSNKVKDKYKITRAQLMKDMLYLYKYILIDPKPMMGSEFLSAIPLAARIILDTKYFIKDYFGDIPYQVELGSNDKLNLYCTIWLRNNVGSDEYLNKAIMPPHECFTLKRNATINDLKLEVERNFREIYWGLRSFVVESFRNLSVNNETEMVFGLIEVGGKVVLEGWQGDIGINMIEQICESDPNNGIMDCTCGTIEDDGERMVSCDICEIWQHSRCVRIPNDEEIPHIFLCKKCEQEIVLFPSLP 656
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma02g00984 656 SUPERFAMILY FYVE/PHD zinc finger 592 648 IPR011011 -
Gma02g00984 656 PANTHER PHD FINGER PROTEIN MALE STERILITY 1 9 656 - -
Gma02g00984 656 CDD PHD_MMD1_like 600 645 - -
Gma02g00984 656 PANTHER PHD FINGER PROTEIN MALE MEIOCYTE DEATH 1-RELATED 9 656 - -
Gma02g00984 656 Pfam PHD-finger 601 647 IPR019787 -
Gma02g00984 656 ProSitePatterns Zinc finger PHD-type signature. 601 645 IPR019786 -
Gma02g00984 656 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 594 651 IPR013083 -
Gma02g00984 656 SMART PHD_3 600 646 IPR001965 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma02g00984 Gma-Chr2 10500045 10503019 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma02g00984 10 656 PHD Transcription Factor Family AT5G22260 50.744 0.0 659
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Gma02g00984 PHD 3.5e-08 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma02g00984 - - gmx:100780210 1369.37