Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma02g00980 ATGGGTACTAAGAGCCTCTTTATGCTTAAGTCCCACATTGATTCCATCAACTTACGAGTTGTGAACGATTTTGTTTGTGTGAACATGTTGTGGGCCTTTGCTTCTCTGCGGGTGTTTGTTTGCAACTATGTTTTCTATGCTTTTGGATTGTTGCTGAGATATCTCTTCAGGTTTCTTCATTTGGGAGATGCAAAAGATGATATTATTGTTCAGAGACTACAACATGTTGAGAAGAACCGGGTTTCTGATTCTGAGATTGATGGGTTCCGAGAGGAGCTTGCTAGTTTTCTGTTTTGGAGTGAAGATTTTCATGAAGAGACAGAGggagaaacagagagctctgtttctttcatggaggttgctcctgaaagtgagagaagagatggagaaacagagttctctgctttttccatggagattactcctgaaagtgagaaaagaaatgttgaaacagattgctctgtttttatggaCATCCACTGTGATGCTCATGAAGATGGGGTGAAAACAGAGGTGCCCACAGAGAGCTCTGTTTCAGAAGAGATTGATTCTGACATTCGTGAAGGTGGTATGAGTAGGGGAATAGAAGAAGAAGGATTTGTTTTCATGAAGAGTGAGTCAGAAAACTCTATTATTCATGAAAATAGTCACGAAGTTGGAAAAGAAACAGATGAACTTTTTTCCAAGGAAACCAACTCAGATGTTCATCAACATGGTAAAAAAATTGATGAAGATGAAATAGAGAACTTTGTTTACTTGGAGAATGACTCTGGTCTCCATCATAGAATTATGAAGAGGGAAGAAGAAGAAGAAATTGATGAACCTGTTTCTGCGGAGATTGATTCTGTTGTTCATGAAGAATTCAAGAAAATTGATGAAAATGAAACTGGGAGTGGTGCTTTAATGGAGAATGTCTCTAGTGAAACTGTAAATGACGATGGTGAGAAAATAGATGAAAATGAGGACTCTGTTTTCGAGGAACAAGAGTCTAATGTTCATGGAGATGATACAAAGAGAGAAGAAAAAGAAGAAGAAACAAATGTGCCTGTTTTGGGGGACAGTAACTCTGTAACAACCACAAGTAAGTGCGAGTACTTATCAGGAAAAGATATAAGTGGGTTCATGGAGGAACCAACAACATTGAGGTTCAGTTTTCGAGAATTTTACATGGGTCCAGATGTTTCAACCGTTTCTGACAATGCATATGCCAGCACAAAAATTATTGCCGACAAGGAATTTTCAGAGTTTGGTTCAGAGAAAAAGCCTCTGGCTCAAGCACAAACAGAGGACTCTGTTCAAGAAGAGGTTTCAGCACCTTCTACCCATATCCCTCTTCACTTTGAGAGTGAGATGTTTGGTGGATCCGATTCATCCGATGAAGATTATTTTCTTTACAACGAAAACTCGGTGACATCGGATTCGGAGTCAGAGTCGTCTAGCTCAAGTGGTCTGAACTGGGGCAACAGCAACAAAATGGATGATTCAATTGTATACCAGTTTCTGGGTGGTAAAAATGGTGGTGAAGGATTTCAACCTGAGATTCTGAAGCTAATGATGAGAGAAGAAAGAGCAGAAGATGTGGAGGAGAAGCATTCTTCATGTGATGGAAAAGTTTCAGAATTTAGTGCTCATGGCATTTATTCTAAAGATGGGTATGTGGAAATGGAACCTTGCATGAAGGGTTTGAAGTCCTTAAAAGCACATGGTTTTGGTGGTAAAGAATCTAAAAAAGCTGTGGTTAAAGATCAAAGAGAAGGTTCAAAAAACAAAGAAGAAGAGGTGTGTAGGAATGGCTTGAAGAGAAATGAAGAAATTAGGTGGGAAGATGAATTGAGTGATTCAGAATCAGATGAGGGTGACTTTGAATGGGAGCATGATGATTTAGTTGAACAGCTGAAATTGGAATTGAAAAATTCAAGGCAAGGAGGACTTGCCACAATTTTAGAAGAAGTGGAAGAGGCGAACGAAGAGGAAGAGGTGGTGGCGTTTGAAGAGGAAGAAAGAGTGTCCCCAAGAGTGGTTGAAGATCCAAAGCCAATGGAAATTGAAGAGAAGCTTGAATACAAGGATCAAATTGATGAAATTCATATAGTTTACAAGAGCTATGCAGAGAAGATGAAGAAACTTGATATCTTGAATTACCAGACCATGCACGCATTAGGTCTTCTTCAACTAAAAGACCCTCTAAAATTAATTTCATTACCAAAATCCGCAATCCAAGGTGCAAAGCCTGTAATCTCTCAGAACTTGTGGCCACGCAAAGCTTCAAAGAACTCATCAGATCCATTGGTGAAGCTTGTTCATGAACTGCATAGAGATTTGGAATTAGTATATGTTGGGCAAGTTTGCCTCTCTTGGGAAATCCTTTGTTGGCAACACAAGAAAGCCCTTGAGTTGCAACAATATGATTCACAAGGGTCTCATAGTCATAGGTATAACCATGTTGCTGGTGAATTTCAACTTTTTCAAGTCCTAGTTCAGAGATTCATAGAGAATGAGCCATTTCAAGGCCCTAGGCTACAGAACTATGTCAAGAACCGTTGTGTGATTCGCAACTTGCTCCAAGTTCCAGGCATTAAAGATGATAGTAAAGGGGATGAAGAAGAGGATGCTATTGCAAGTGGAAAGTTGGCAGATATCATCAAGGAATCAATGAGGGTGTTCTGGGAATTTGTTCGAGCAGATAAAGATTATGGGAATGTGATCTTTAAAGCTTCTCAGCACAACAGAATTGATCTTAAAGACCCTATAATTTCTGGTCTTATGGTGGACATTAAAACACAACTACAGAAAAAGGACAGAAGGCTCAAGGACATAGTGAGAACCGGGAATTGCATAGTTAAGAAGTTCCAAAAGCACCATGAGGATCAACTTGATCATGAGCAATTGGTTGCTCAGCTTCTTGCGGCGCATGTTTTTGCTTTCGCCGAAAACCCTAACAACACAGGCGCAGAGCGTGATCCATTGACGAAGATGGTGCAGCGTCTCACCTACCGCAAGAGGCACAGCTATGCCACCAAATCCAACCAACACAGGGTCGTCAAAACCCCTGGTGGGAAGCTCGTTTATCAGACCACCAAGAAGAGGGCCAGCGGGCCCAAGTGCCCCGTCACTGGCAAGAGGATTCAGGGGATTCCACACTTGAGGCCTGCAGAGTACAAGAGATCAAGGTTACCCAGAAACCGTAGGACTGTCAACCGTGCATATGGCGGAGTTTTGTCTGGAAGTGCTGTCAGGGAGAGGATTATCCGAGCTTTCTTAGTTGAAGAGCAAAAGATTGTGAAGAAGGTCTTGAAGATCCAGAAGGCAAAGGAAAAGCAAGCCTCAAAGGCTTGA 3336 0.3939 MGTKSLFMLKSHIDSINLRVVNDFVCVNMLWAFASLRVFVCNYVFYAFGLLLRYLFRFLHLGDAKDDIIVQRLQHVEKNRVSDSEIDGFREELASFLFWSEDFHEETEGETESSVSFMEVAPESERRDGETEFSAFSMEITPESEKRNVETDCSVFMDIHCDAHEDGVKTEVPTESSVSEEIDSDIREGGMSRGIEEEGFVFMKSESENSIIHENSHEVGKETDELFSKETNSDVHQHGKKIDEDEIENFVYLENDSGLHHRIMKREEEEEIDEPVSAEIDSVVHEEFKKIDENETGSGALMENVSSETVNDDGEKIDENEDSVFEEQESNVHGDDTKREEKEEETNVPVLGDSNSVTTTSKCEYLSGKDISGFMEEPTTLRFSFREFYMGPDVSTVSDNAYASTKIIADKEFSEFGSEKKPLAQAQTEDSVQEEVSAPSTHIPLHFESEMFGGSDSSDEDYFLYNENSVTSDSESESSSSSGLNWGNSNKMDDSIVYQFLGGKNGGEGFQPEILKLMMREERAEDVEEKHSSCDGKVSEFSAHGIYSKDGYVEMEPCMKGLKSLKAHGFGGKESKKAVVKDQREGSKNKEEEVCRNGLKRNEEIRWEDELSDSESDEGDFEWEHDDLVEQLKLELKNSRQGGLATILEEVEEANEEEEVVAFEEEERVSPRVVEDPKPMEIEEKLEYKDQIDEIHIVYKSYAEKMKKLDILNYQTMHALGLLQLKDPLKLISLPKSAIQGAKPVISQNLWPRKASKNSSDPLVKLVHELHRDLELVYVGQVCLSWEILCWQHKKALELQQYDSQGSHSHRYNHVAGEFQLFQVLVQRFIENEPFQGPRLQNYVKNRCVIRNLLQVPGIKDDSKGDEEEDAIASGKLADIIKESMRVFWEFVRADKDYGNVIFKASQHNRIDLKDPIISGLMVDIKTQLQKKDRRLKDIVRTGNCIVKKFQKHHEDQLDHEQLVAQLLAAHVFAFAENPNNTGAERDPLTKMVQRLTYRKRHSYATKSNQHRVVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPAEYKRSRLPRNRRTVNRAYGGVLSGSAVRERIIRAFLVEEQKIVKKVLKIQKAKEKQASKA 1111
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma02g00980 1111 Gene3D - 992 1028 - -
Gma02g00980 1111 MobiDBLite consensus disorder prediction 576 595 - -
Gma02g00980 1111 ProSitePatterns Ribosomal protein L34e signature. 1006 1019 IPR018065 -
Gma02g00980 1111 PANTHER OS09G0413600 PROTEIN 14 303 - -
Gma02g00980 1111 PRINTS Ribosomal protein L34 signature 1057 1079 IPR008195 GO:0003735|GO:0005840|GO:0006412
Gma02g00980 1111 PRINTS Ribosomal protein L34 signature 1004 1017 IPR008195 GO:0003735|GO:0005840|GO:0006412
Gma02g00980 1111 PRINTS Ribosomal protein L34 signature 1035 1045 IPR008195 GO:0003735|GO:0005840|GO:0006412
Gma02g00980 1111 PRINTS Ribosomal protein L34 signature 1017 1034 IPR008195 GO:0003735|GO:0005840|GO:0006412
Gma02g00980 1111 Gene3D - 1030 1111 - -
Gma02g00980 1111 Pfam Ribosomal protein L34e 992 1087 IPR008195 GO:0003735|GO:0005840|GO:0006412
Gma02g00980 1111 Coils Coil 647 668 - -
Gma02g00980 1111 MobiDBLite consensus disorder prediction 307 355 - -
Gma02g00980 1111 PANTHER FINGER FYVE DOMAIN PROTEIN, PUTATIVE (DUF1666)-RELATED 14 303 - -
Gma02g00980 1111 PANTHER FINGER FYVE DOMAIN PROTEIN, PUTATIVE (DUF1666)-RELATED 311 966 - -
Gma02g00980 1111 PANTHER OS09G0413600 PROTEIN 311 966 - -
Gma02g00980 1111 MobiDBLite consensus disorder prediction 326 348 - -
Gma02g00980 1111 Pfam Protein of unknown function (DUF1666) 772 966 IPR012870 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma02g00980 Gma-Chr2 10439924 10448600 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma02g00980 992 1110 Cytoplasmic Ribosomal Protein Gene Family AT1G69620 92.437 2.05e-68 223
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma02g00980 - - gmx:100784525 1806.96
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma02g00980 02 10439924 10448600 Gma02g00980 02 10439924 10448600 ECH