Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma02g00973 ATGGTGGTGTCGTTCACCGAAAGGAAAAACTTCGGCATTGACTGGTCTATGGTGGAATCATTACCGAACTTCAAATTCAGAGTGCTACGGGGGCAAAAGGAAGGACTCAATTGCGCGGTGTGCCTGAACAAGTTTAAGGTCGCGAAGGTTCTCCGGCTATTGTCGAAATGCAAGCACGCGTTTCACGTGGAGTGTGTGGACTCGTGGTTGGACGTGCATTCTATGTGTCCTCTCTGCTGCTATTGTATGGATCCAGAGGACATTTTCTTGGTAGAGGAAGCAAAGCCTTTCCACCAAAGTCATCAACAACAGAACCACGATCAGGGATGCGTGTGTTTGAATCTGGACCTGGAGAAGCAGGGGATAGTAAAGTCTCGACAGAGGCATTTGTTCGTTTGGGGTGGGGGAAGGAGAAACAACAGAGGAGTAGCAACAGAGTCGGAGGTGGACGACGTCATTTAG 462 0.4935 MVVSFTERKNFGIDWSMVESLPNFKFRVLRGQKEGLNCAVCLNKFKVAKVLRLLSKCKHAFHVECVDSWLDVHSMCPLCCYCMDPEDIFLVEEAKPFHQSHQQQNHDQGCVCLNLDLEKQGIVKSRQRHLFVWGGGRRNNRGVATESEVDDVI 153
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma02g00973 153 SMART ring_2 38 79 IPR001841 -
Gma02g00973 153 PANTHER RING-H2 FINGER PROTEIN ATL43 4 142 - -
Gma02g00973 153 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 4 142 - -
Gma02g00973 153 Pfam Ring finger domain 37 79 IPR001841 -
Gma02g00973 153 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 13 88 IPR013083 -
Gma02g00973 153 ProSiteProfiles Zinc finger RING-type profile. 38 79 IPR001841 -
Gma02g00973 153 SUPERFAMILY RING/U-box 32 84 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma02g00973 Gma-Chr2 10375845 10376306 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma02g00973 8 91 C3H Transcription Factor Family AT5G05810 67.857 1.06e-36 128
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma02g00973 K19041 - gsj:114372535 308.916