Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma02g00941 ATGCAAGGACAAAGGAGGACTGTTGGGTCGTTCCCAGCAATTGTTAGTATGATGCAAGGGCCCAGTTCTAGTGGCACTGATATGAACCACCAGTCTTCCTTGAATCATGTGCAAAATGCAGTAGATTTCTGTTTGTCAGATTATAGGGGATCTTCTGGTGAGACTGCATGTTTACGTGGTACTGGTCATAATGTTCAGAGCTTCAGTGGCTGGAATACTGGTGAATCTAGTTCAAGACTCAATCTGATCAACCAAGTCAATGATGAAGGTCTAAAATCAGAACATGGGCTGTCTTCTTCGTATAATGCTGCTACCGAGGATGATCTCAGGTCTGAGGAAGGACAATTCAAAGCAAATAATGTAATTTTTCCTGTTAGTTCAAATACTAATCTACATGGCAATCAATCTAGAGTTCACCCTTCCTTTTTGCAAGGTTCCAGTTCTACTCATATTAACCAGAATATTAGTCTAGATATGGGGCATGTAGCTAATGCTGCTGATCGTGGGAAGGGCAAAGAAGCTGGTAGTAGTGTTAATGCCAACAATACTAGTGGAATAGACAGAGAAAAGACATTGTTTGGCAGTGCTTCATGTAATCACACAGGAGCTTCATCTGAAAGCTCTGGATACATGGCTTGGGGTGATAGTGCTAATTCAAGTTCTTCTTTAGTTAATTGGGGTCCTTCCTGCAAGAGAAAGGCTCTTGAAGGTAGTTCTAGGCAACTGTGTTCTGGAGGAAGCTCAAGCACTCTTGTACAATCCGGAAATGGTTGCTGGCCTACTGATCCTGTTGATCTTAATGCTTCCAGCGACTTAACTGATTCTACACCTATAGAAGATATTCCTGTTACTAGTCCTCCATTATTTCAGAATGCAACAAATGAAGAGCGACAAGAAGCTCCCAATGGATTTCCTTTGATAAGTATTGCAGAAAATGTGGAAAGGCCTCTAAGAAACTTCGATAGAAGAATGAGCCATCTACAGCATCAGGAATCTGTACCTCTCAATTTACCATCAACAGGGAGTGCTAGGCATCATAATCATTCTTCTCTGCATCAAGCACCTGGCTCTCACTCAATCAATGATTCGTTGGAGTTGAGGTTAACAGCTGGAGGGACATCTTCTGCTAATTCTGGCGCTTCTCTGAACCAGTCACCTGCCTTGCGCATCCATTCTTTTCCTTGGAACAGAACTGCCAATCCTAGAGGGGCCAGATCTTCAACTTCTTATAACTCTGGAGAAAGAGCCGTGCGCGAAGATTTTAATTTGAGAATGTTTCCAAGAGATAGTACGGAACACCCCATGAATGTGCCTGCATCTTCAGGACACGAACCTATTGGTTGGCATACACCATCTGGTAATGTGAACAATTCTGGAGGTGCACCTCCTCCATCCTGGATTGGATCTAGTTCAAATGTTCACTCTCCCGCTAACCGTAGCTGGATTTTTAATCATGAAGTCCCAGCAGAAAATATGCAGAGTGTGTCAGAGTTCAGTCCTTGGTCCCTTTTTCCATCAATTAGCTCTGCATCTGGTGTTCATAATGCCCATTCTGCCCCATCTTCTTCTGGTCCTACTTCATTTACCCAGGGTTCTAGCAGCAACCAATCATACGCAAGAACAGCATTGGTGATGGAAAGAAGGGGTGGTGATGTTCTCTCTGGTGGTCCCCATTCACTGCGAGCATTAACCTTTGACAATGAGGGGAGACGTCGACTAATATCTGAGATTCGCCAAGTCTTGATGGCAATGCGGAGGGGTGAGAACTTACGAGCTGAGGATTATATGGTCTTTGACCACCCTTTCTTATATCATGGCATGGCTGAAATGCACGACAGGCACAGAGAAATGCGCCTTGATGTCGACAACATGTCTTATGAGGAATTGTTGGCATTGGAGGAGCATATAGGAGACGTGAGCACTGGATTGAATGAGGATGTCATCATTAAGTTGATGAAACAGAGAATTTACGTGCGTGCCATTATCATGACAGACTCTTATACAGATCTGGAACCTTGTTGTATCTGTCAGGAGGAATTTTCTGATGGGGAGAATGTTGGATCACTGGATTGTGGGCATGAGTTTCACAGTGGTTGCATTAAGCAGTGGCTAATGCAGAAGAACCTGTGTCCCATTTGCAAAACAACAGCCTTAGCTACATGA 2163 0.4378 MQGQRRTVGSFPAIVSMMQGPSSSGTDMNHQSSLNHVQNAVDFCLSDYRGSSGETACLRGTGHNVQSFSGWNTGESSSRLNLINQVNDEGLKSEHGLSSSYNAATEDDLRSEEGQFKANNVIFPVSSNTNLHGNQSRVHPSFLQGSSSTHINQNISLDMGHVANAADRGKGKEAGSSVNANNTSGIDREKTLFGSASCNHTGASSESSGYMAWGDSANSSSSLVNWGPSCKRKALEGSSRQLCSGGSSSTLVQSGNGCWPTDPVDLNASSDLTDSTPIEDIPVTSPPLFQNATNEERQEAPNGFPLISIAENVERPLRNFDRRMSHLQHQESVPLNLPSTGSARHHNHSSLHQAPGSHSINDSLELRLTAGGTSSANSGASLNQSPALRIHSFPWNRTANPRGARSSTSYNSGERAVREDFNLRMFPRDSTEHPMNVPASSGHEPIGWHTPSGNVNNSGGAPPPSWIGSSSNVHSPANRSWIFNHEVPAENMQSVSEFSPWSLFPSISSASGVHNAHSAPSSSGPTSFTQGSSSNQSYARTALVMERRGGDVLSGGPHSLRALTFDNEGRRRLISEIRQVLMAMRRGENLRAEDYMVFDHPFLYHGMAEMHDRHREMRLDVDNMSYEELLALEEHIGDVSTGLNEDVIIKLMKQRIYVRAIIMTDSYTDLEPCCICQEEFSDGENVGSLDCGHEFHSGCIKQWLMQKNLCPICKTTALAT 720
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma02g00941 720 PANTHER ZINC FINGER PROTEIN, PUTATIVE-RELATED 2 720 - -
Gma02g00941 720 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 638 718 IPR013083 -
Gma02g00941 720 MobiDBLite consensus disorder prediction 399 413 - -
Gma02g00941 720 MobiDBLite consensus disorder prediction 393 413 - -
Gma02g00941 720 SUPERFAMILY RING/U-box 672 717 - -
Gma02g00941 720 MobiDBLite consensus disorder prediction 265 305 - -
Gma02g00941 720 Pfam Ring finger domain 673 714 IPR001841 -
Gma02g00941 720 MobiDBLite consensus disorder prediction 512 535 - -
Gma02g00941 720 MobiDBLite consensus disorder prediction 334 359 - -
Gma02g00941 720 MobiDBLite consensus disorder prediction 167 186 - -
Gma02g00941 720 MobiDBLite consensus disorder prediction 266 298 - -
Gma02g00941 720 CDD RING-H2_TTC3 672 714 - -
Gma02g00941 720 ProSiteProfiles Zinc finger RING-type profile. 673 714 IPR001841 -
Gma02g00941 720 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 2 720 IPR045191 GO:0061630
Gma02g00941 720 SMART ring_2 673 713 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma02g00941 Gma-Chr2 10001992 10005360 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma02g00941 18 720 C3H Transcription Factor Family AT2G15530 36.351 4.92e-107 340
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma02g00941 - K19041 gmx:100820322 1459.51