Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Gma02g00939 ATGCCCGGTAGTTTAGAACCGTTGGATTTGGGTGTTCACATACCCTACCACTTCAGATGCCCAATCTCGCTCGAACTCATGCGAGACCCAGTAACCGTCTGCACCGGTCAAACCTACGACCGCGCCAGCATCGAGGCATGGGTCAGCACCGGCAACAGCACGTGTCCGGTCACACGCGCCACTCTCACAGACTTCACCCTAATCCCGAACCACACCCTTCGCCGCCTTATCCAAGAGTGGTGCGTCGCTAACCGCGCTTTTGGCGTCGAGCGAATCCCCACTCCCAAACAGCCCGCAGACCCTGCCTTAGTTCGCTCTCTCCTCAACCAAGCTTCTTCCGGTTCTGCCCCTGCTCACCTCCGCCTTTCTTCCATTCGCCGACTCAGACAACTCGCTCGCGACTCGGACAAGAATCGTTCCCTCATTGCCTCTCACAACGTTCGCCAGATCCTTCTCCCTATCGTTTTCAACAACGGTTCGGATGAGTTGAAAAACGAATCGCTCGCGCTACTCGTTATGTTTCCGCTTGGTGAGTCGGAATGTGCTTCGCTCGCATCTGATTCTGTGAAGATTGGCTATCTATCGCGGATGTTGACGCATAACTCGTTCGACGTCCGAGTCAACTCGGCCGCGTTGATCGAGATCGTCGTCGCCGGGACGCACTCGCCGGAGCTACGCGCGGAGGTGAGCAGTGTCGACGAAATCTACGACGGAGTGGTGGATCTGCTCCGGAGCCCGATCTCGCACCCGCGCGCGCTCAAGATCGGGATCAAGGCCTTGTTCGCGCTTTGTTTGGTGAAGAATACGCGGCAGAAGGCGGTGGACGCCGGCACGCCGGCGGTTCTAGTCGACCGGCTCGCGGACTTCGAGAAGTGCGACGCGGAGAGGGCGCTGGCCACGGTGGAGCTGCTCTGCCGGATTCCGGCGGGATGCGAGGCGTTCGCCGGACACGCGCTGACGGTGCCGATGCTGGTGAAGATAATTCTGAAAATCTCCGACCGTGCGACGGAGTACGCCGCCGGAGCGCTGCTCTCGCTGTGTTCGGAATCGGAGCGGTGCCAGCGCGAGGCGGTGGCGGCGGGCGTGCTGACTCAGCTTCTGCTTCTCGTGCAGAGCGATTGCACGGAGAGAGCGAAGAGGAAGGCGCAGATGCTGCTGAAGCTTCTTCGGGATTCGTGGCCGCAAGATTCCATCGGAAATAATTCTGACGATTTTGCATGCAGCCAGGTCGTTGTGGTTCCCTTTTGA 1248 0.5929 MPGSLEPLDLGVHIPYHFRCPISLELMRDPVTVCTGQTYDRASIEAWVSTGNSTCPVTRATLTDFTLIPNHTLRRLIQEWCVANRAFGVERIPTPKQPADPALVRSLLNQASSGSAPAHLRLSSIRRLRQLARDSDKNRSLIASHNVRQILLPIVFNNGSDELKNESLALLVMFPLGESECASLASDSVKIGYLSRMLTHNSFDVRVNSAALIEIVVAGTHSPELRAEVSSVDEIYDGVVDLLRSPISHPRALKIGIKALFALCLVKNTRQKAVDAGTPAVLVDRLADFEKCDAERALATVELLCRIPAGCEAFAGHALTVPMLVKIILKISDRATEYAAGALLSLCSESERCQREAVAAGVLTQLLLLVQSDCTERAKRKAQMLLKLLRDSWPQDSIGNNSDDFACSQVVVVPF 415
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Gma02g00939 415 SUPERFAMILY RING/U-box 12 90 - -
Gma02g00939 415 CDD RING-Ubox_PUB 18 59 IPR045210 -
Gma02g00939 415 Gene3D - 96 310 IPR011989 -
Gma02g00939 415 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 4 411 - -
Gma02g00939 415 Pfam U-box domain 14 85 IPR003613 GO:0004842|GO:0016567
Gma02g00939 415 Gene3D - 311 412 IPR011989 -
Gma02g00939 415 SUPERFAMILY ARM repeat 103 389 IPR016024 -
Gma02g00939 415 SMART Ubox_2 17 80 IPR003613 GO:0004842|GO:0016567
Gma02g00939 415 ProSiteProfiles U-box domain profile. 13 87 IPR003613 GO:0004842|GO:0016567
Gma02g00939 415 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 13 87 IPR013083 -
Gma02g00939 415 PANTHER WDSAM1 PROTEIN 4 411 IPR045185 GO:0061630
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Gma02g00939 Gma-Chr2 9958853 9962844 Dispersed/Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma02g00939 1 415 U-box Gene Family AT1G49780 65.647 0.0 532
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma02g00939 - - gmx:100810176 807.749
       

Event-related genes


Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma07g02075 07 42470035 42472059 Gma02g00939 02 9958853 9962844 GST