Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma02g00935 ATGACTGAATCAAACGCAAACATTCTTCAATGTCCTTTAAACCAGCAACTCTATAGCTCCTTAGATGGCCCAGTAGCAATCCTTTGGGATATTGAAAATTGTCCAGTTCCATGTGATGTGCGCCCTGAGGATGTAGCAGGTAATATAAGAATGGCTTTACGGGTGCACCCAGTAATTAAAGGAGCTGTTATGATGTTTTCTGCTTATGGGGATTTCAATGCTTTCCCTAGGCGACTTAGAGAGGGCTGTCAGAGAACTGGCGTTAAACTTATTGATGTTCCCAATGGGAGAAAAGATGCTGCTGATAAAGCTATCTTGGTCGACATGTTCTTATTTGCTCTTGACAACCCTCCACCATCCTCTATCATGCTTATATCTGGGGATGTTGATTTTGCACCAGCACTTCACATTCTTGGTCAGCGGGGATATACTGTAATTCTTGTCATCCCTGCTAACGTGGGTGTTTCTTCTGCCCTATGCAATGCTGGTAAATTTGTTTGGGACTGGCCTAGTGTGGTTCGTGGAGAAGGCTTTGTGCCCCCTTCGAAGGCTTTAGTGCCACCACGTGGAGGTCCAGTTGAACTTGCTGGACACTTTATGGGATGCCATATCAATGACAACTCTGATGGACAAAATGAAGAAGAAGCAATAGTTTATAGAGGTATGTCACAGAGCTATTATAACTCAAGGGAATTCTCAATGGTGTCACAATCTCTGTCTGAATACAACAATGGCACATTGAACACGACTTGCTTGCCTACAACTATGAGAACACATAGCCTTCCATCTGTATTGAATGATGTTCCAGGAGGGTCTATGATGCCTTCGAGTGACCTTAATGAATGTCAGTTATGGGTACAGCCTGGGGATTTAAATGGTCTCAAGGGGCAGCTGGTAAGGTTGCTCGAACTTTTTGGAGGATGCCTACCTCTGGCCCGAGTTCCAGCAGAGTACCAGAAACTTTATGGGAGACCTCTTTATGTATCTGAATATGGAGCAATAAAGTTGGTCAATCTTTTCAAGAAGATGGGCGATGCCCTGGCTGTGGAAGGGAAAGGGAATCGGAAATTTGTGTATCTCAGAAACTGGAAGGCAGGCCCAAGTGCTCCTCCTCTCTCTCTGGCAAAGAAAGACAAGAAAGGAAAGGAAGCCCAGGAAGAGAATGTGAATATTGTCACTGGTGGATGCTCTTCAGATGAGTTCTCAGATGAAGAAAGAGTAGTCATCGAAGAGCATGATGAAAGAAGTTGCATAGGGAAGGGGAATCAGGGTAGAGCTGCCAAATGTGAAATTGATGACCGTTTTATTGAGCAATTTAAGTATGAGCTGCAAGAGATTCTGGTAAGCTATTCTTGTCGCATATTCCTAGGTTGTTTTGAGGCTATATACCAGCAGCGTTACAAGAAACAACTGGAATATCAGAGATTTGGTGTGGACAAGTTGGAAGATTTGTTTGAGAAAGTGAGTGATGTGGTGGTACTGCATGAGGAACCAGTAAGCAAGAAGAAGTTCCTGGCTGCTGTAGGTGGTTAG 1533 0.4403 MTESNANILQCPLNQQLYSSLDGPVAILWDIENCPVPCDVRPEDVAGNIRMALRVHPVIKGAVMMFSAYGDFNAFPRRLREGCQRTGVKLIDVPNGRKDAADKAILVDMFLFALDNPPPSSIMLISGDVDFAPALHILGQRGYTVILVIPANVGVSSALCNAGKFVWDWPSVVRGEGFVPPSKALVPPRGGPVELAGHFMGCHINDNSDGQNEEEAIVYRGMSQSYYNSREFSMVSQSLSEYNNGTLNTTCLPTTMRTHSLPSVLNDVPGGSMMPSSDLNECQLWVQPGDLNGLKGQLVRLLELFGGCLPLARVPAEYQKLYGRPLYVSEYGAIKLVNLFKKMGDALAVEGKGNRKFVYLRNWKAGPSAPPLSLAKKDKKGKEAQEENVNIVTGGCSSDEFSDEERVVIEEHDERSCIGKGNQGRAAKCEIDDRFIEQFKYELQEILVSYSCRIFLGCFEAIYQQRYKKQLEYQRFGVDKLEDLFEKVSDVVVLHEEPVSKKKFLAAVGG 510
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma02g00935 510 ProSiteProfiles OST-type HTH domain profile. 290 362 IPR025605 -
Gma02g00935 510 PANTHER LIMKAIN B LKAP 13 505 IPR024768 GO:0005777|GO:0010468|GO:1903231
Gma02g00935 510 ProSiteProfiles OST-type HTH domain profile. 435 509 IPR025605 -
Gma02g00935 510 CDD LOTUS 436 498 - -
Gma02g00935 510 Gene3D - 432 503 IPR041966 -
Gma02g00935 510 Gene3D - 290 359 IPR041966 -
Gma02g00935 510 CDD LOTUS 291 360 - -
Gma02g00935 510 Pfam NYN domain 24 164 IPR021139 GO:0004540
Gma02g00935 510 PANTHER - 13 505 - -
Gma02g00935 510 Gene3D - 22 170 - -
Gma02g00935 510 CDD PIN_limkain_b1_N_like 24 150 - -
Gma02g00935 510 Pfam OST-HTH/LOTUS domain 437 498 IPR025605 -
Gma02g00935 510 Pfam OST-HTH/LOTUS domain 293 358 IPR025605 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma02g00935 Gma-Chr2 9907152 9908684 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma02g00935 21 175 C2H2 Transcription Factor Family AT5G61190 41.290 1.33e-27 115
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma02g00935 - - gmx:100818186 1040.02