Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma02g00866 ATGGCTTCTTCATTGGGTCGAAGAAGAACCCACGCTCCCAAAGCATCCTCCACCCTTAACGACGACGTTTCCTGCGAGGAATGCGGCGGTGGCCACTCCCCTTCCAAGCTTATTCTCTGCGACAAATGCGACCGTGGCTACCACCTCTTCTGCCTCCGTCCAATTCTTCCCTCTGTTCCCAAAGGCTCTTGGTTCTGCCCCTCTTGCTCCAATCACAAACCCAAGTCTTTCCCCCTTGTCCAGACCAAAATCATCGACTTCTTTCGAATCCAACGCTCCCCTGAGGCATTATCAAATCAAGACACGCGGAGGAAGCGAAAGCGGGGTGGGGGCTTGGTGGTATCGAAGAAGAAGAGGAAGCTGTTGGCGTTCGTGCCGAGTGAGGATCCCAATAGAAGATTGGAACAGATGGCGTCGCTGGCGACGGCGTTGACCAAAACTAGAACGGAGTTCAGCAATCAGCTTACTTACATGCTTGGGATGGCACCAAGGTCCGCTAATCGTCCTGCTCTTGAGCGCGGTGGAATGCAGGTGGTTTTGTCAAAAGAAGACACCGAGACCTTAAACCTGTGCAAGCGTATGATGGAAAGAGGAGAATGGCCACCACTCATGGTTGTTTTTGATCCTCTAGAAGGCTTCACTGTAGAAGCAGATAGATCCATCAAAGATTTAACCATAATAACAGAATATGTTGGAGATGTAGACTTTTTAAAAAATAGGGAAAATGACGATGGAGATAGCATAATGACACTTCTCTCAGCTTCTGATCCTTCGCGGACGCTTGTCATCTGTCCAGACAAACGAAGCAACATAGCTCGATTCATTAATGGCATCAATAATCACACGCCGGAAGGGAAAAAGAAGCAGAACTTAAAATGCGTGAGGTTTGATGTTGGAGGTGAATGCCGGGTTCTTTTAATTGCCAATAGAGATATTACAAAGGGGGAAAGGTTATACTACGACTACAACGGAGATGAACATGAATATCCTACTGAACATTTTGTCTGA 1008 0.4762 MASSLGRRRTHAPKASSTLNDDVSCEECGGGHSPSKLILCDKCDRGYHLFCLRPILPSVPKGSWFCPSCSNHKPKSFPLVQTKIIDFFRIQRSPEALSNQDTRRKRKRGGGLVVSKKKRKLLAFVPSEDPNRRLEQMASLATALTKTRTEFSNQLTYMLGMAPRSANRPALERGGMQVVLSKEDTETLNLCKRMMERGEWPPLMVVFDPLEGFTVEADRSIKDLTIITEYVGDVDFLKNRENDDGDSIMTLLSASDPSRTLVICPDKRSNIARFINGINNHTPEGKKKQNLKCVRFDVGGECRVLLIANRDITKGERLYYDYNGDEHEYPTEHFV 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma02g00866 335 SUPERFAMILY FYVE/PHD zinc finger 16 76 IPR011011 -
Gma02g00866 335 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 9 84 IPR013083 -
Gma02g00866 335 CDD PHD_RSF1 25 69 - -
Gma02g00866 335 ProSiteProfiles Zinc finger PHD-type profile. 22 72 IPR019787 -
Gma02g00866 335 Gene3D SET domain 105 335 IPR046341 -
Gma02g00866 335 Pfam PHD-finger 25 71 IPR019787 -
Gma02g00866 335 SUPERFAMILY SET domain 192 326 IPR046341 -
Gma02g00866 335 ProSitePatterns Zinc finger PHD-type signature. 25 69 IPR019786 -
Gma02g00866 335 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE ATXR6 7 332 - -
Gma02g00866 335 SMART PHD_3 24 70 IPR001965 -
Gma02g00866 335 CDD SET_ATXR5_6-like 198 335 - -
Gma02g00866 335 ProSiteProfiles SET domain profile. 201 323 IPR001214 GO:0005515
Gma02g00866 335 PANTHER HISTONE ACETYLTRANSFERASE 7 332 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma02g00866 Gma-Chr2 8709091 8710914 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma02g00866 12 85 C2H2 Transcription Factor Family AT3G01460 32.468 4.42e-08 53.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Gma02g00866 PHD 2.3e-11 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma02g00866 K24406 - gmx:100791762 655.981