Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma02g00816 ATGGATGAGCAAATTATGTCATCTAATATATTGGTACAGTGTCGAATATGCCACGATGAGGATGAAGAGTCAAACATGGACACACCCTGTTCTTGTTGTGGCACATTGAAGTATGCACATAAAAAATGTGTTCAAAGATGGTGCAATGAGAAAGGTGATACTATATGTGAAATTTGCCAACAGCAACTTAAGCCCGGCTATACTGCACCGCCATTGCCTCCTCTGTTACATTATGGTGGTTCTCCAATAACTTTTGGATGGAACTGGGAGATTTCAAGAAGGGATCTTCATAGCCACCAGTTCATAGCGATGTTTAATGCTAATCGTGAATTCCTAGACCTTGACTTTTCATATTCGTCAGCACCTTCTACAAGAAGCTTGATATTTTTCCGCATTATTGCCATTATTTTTATTGTTCTTCTTCTTTTACGCCATACACTTCCGATCATATTTATACTCAGTGGAGCAAGAGCATATTCATTGGCAGTGTTTATGCTAGTAGTGTTGAGAATCATTGGAATGATTGTACCAGTGTATATAATGGTTAAAGCTATTATTGCAATGCAACAGTTCCAATATCAGACACTCGATAATCAGCATTCCCCTATGCAAGCACACGGGGAAGATGAAATAGGACAATCTCAGTTGCGTGTCATTCATATTCAGTGA 669 0.3886 MDEQIMSSNILVQCRICHDEDEESNMDTPCSCCGTLKYAHKKCVQRWCNEKGDTICEICQQQLKPGYTAPPLPPLLHYGGSPITFGWNWEISRRDLHSHQFIAMFNANREFLDLDFSYSSAPSTRSLIFFRIIAIIFIVLLLLRHTLPIIFILSGARAYSLAVFMLVVLRIIGMIVPVYIMVKAIIAMQQFQYQTLDNQHSPMQAHGEDEIGQSQLRVIHIQ 222
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma02g00816 222 Pfam RING-variant domain 14 59 IPR011016 GO:0008270
Gma02g00816 222 SMART ringv_2 13 60 IPR011016 GO:0008270
Gma02g00816 222 CDD RING_CH-C4HC3_MARCH 14 60 - -
Gma02g00816 222 Pfam Protein of unknown function (DUF3675) 65 185 IPR022143 -
Gma02g00816 222 ProSiteProfiles Zinc finger RING-CH-type profile. 6 66 IPR011016 GO:0008270
Gma02g00816 222 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 2 68 IPR013083 -
Gma02g00816 222 PANTHER RING/FYVE/PHD ZINC FINGER DOMAIN-CONTAINING 4 210 IPR033275 -
Gma02g00816 222 PANTHER E3 UBIQUITIN-PROTEIN LIGASE MARCH-RELATED 4 210 - -
Gma02g00816 222 SUPERFAMILY RING/U-box 11 63 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma02g00816 Gma-Chr2 8126899 8129083 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma02g00816 13 60 C3H Transcription Factor Family AT2G37950 45.098 1.53e-06 45.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma02g00816 - - gmx:100784696 445.662