Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma02g00811 ATGGATTTCGAAACCCTAGACTCCACCCAACTATTCCTCATCGCCCTCAAAACCCTCCAACCCCAACCCTCACTCCAAACTCATCATCCCCCACACCCGTTTCCTTGTCAACGCCTTCAGCCACGCCGGCCCCCACTCCCACTACTTCGACCTCTCCCATTTCTGGTCCCGCGGCGTCATCTTCTACACCTCTCACCTCGCCGCCCTCGTCGTCCCCCTCCCACTCTGCTAGCCGCTCTGCATCGCCGGCGTCCAAGTCACGCCAACCACTGTCCCAGTGCCGTCCAGTCCCTCTTCATCCCCCGCGCCACCGATGACACCACTGCCCTTAGGTACGCCCACAACAGCGATTTTCGCTTTTCTAATTGCATGGTTTCTGAACCCGCCCTTGCCCCATTCGTCGGTGTCGATGCAATGTTTCTTGACACCACCTATTGTAACCCTAACGTTGAGTGCAAGTGTGAGAATAATAGTAATGATAAAGTTTTGTTTCTTGTTGCTACTTATGTCATTGGGAAGGAGAAGATTTTGCCTAAGCTTGCGCGTAGGTTTAAGAGGAAGATACACGTTGATGCTAGGAAGATGGAGGTTTTGAGGGTTCTTGGGTATGGGGAGAATGGTGAGTTTATTAAGGATGAGAAGGAGAGTAATATTCATGTTGTTGGGTGGAATGTGTTGGGGGAGACTTGGCCTTACTTTAGGCCTAATTTTGTCAGGATGAAGGAGGTTGTCAGCTTTGTTCCAACCCAATGGACCTATGAAGTCAAGCGGAATAAGTTTGCGGTGAAGTCCAAGGATTCGTTTCAGATTAATCTTGTGCCATATATATGTGATGTTGAGAAGAGTGACAGTAAACATGCTGACAAAATGAGGAAGTACTTTACCTGGCTGGTTGATGAGACTGCCAACAAGCAGGATTTTTTAAGGGGTTTTCATTGTGTCCCTTGTGAGAAGGGTGAAGTGGGTTTCAAGGCTGAGAAGGTTGTTAGTGATGCTCGGGAGCCAGGGCAAGACATGGACAAAGAAGTCAATGCATTGGAGAAGACAGAAGGTGATATAGGTATTGGTCCAGATGTGGCTGTGGGTTTGTCTTCTTTTATGGAAGAAACATGGAGCAATGTCGTTGAAGCTGTTTCTAATTTCTATAAACGTGAAACTGAATTTCATGAGCAAGTGATTTCTTGTCAAAATCCTGTTTCAACACCCAAGGGCTGCTCATTAAATACCGATTCACTTGCAAAACCATGTCTTAATACAAACAACACTGGCAAAAATATTAACATTTTTTCAAGTCAAGACTCTAAACTAAATAACCTGAGGCATACAGTGCCTAGTCCCATTTCTCCTGCcAAAAGGAAGAGAAGTAGTGACAGTAAGCAAAAAAAAAAAAAACCTAAAGTCAAAGCAAGATCTGAACCAAGTGGTTCAAAGCAGGCCACAATCACGAGATTCTTCAGTAAATTAATACCTGAGATGCCTGGTGGTGCTCATTCTTATAATTCTGAACCAAAGCTTGACCAAAGCTCTAAAGTTGAAGACTTATTGCCAACTGATGATAGGCAATTGTACAAGGATGAAATTGATCAATTTATGCAAATAATAAATGGGAATGAGTCATTAAAAAAATATGCCATCACTATAATTGAGAAGACAAAAGGTGATATCAATAAGGCATTGGACATATATTACGGTAATTCTGAATATCTTGGTGAAAATAAAATATCAGTGGAGAGCAAAATTGATAGACCTGTAAAAGTCTTGAAAGATAATGTAGATGCTACCCATTTATCTCTACCACCTGAGAAATACAACCCTAAAGAACATGCAACGTGTTGGAGAGATGGACAGCCTGCACCATATTTACATATTGCACGAACCTTAAACCTGCTTGAGGGTGAGAAAGGAAAGATTAAAGCTACTTCATTGCTATGCAATATGTTCAGAAGTTTGTCGGCCTTATCTCTAGCAGATGTGCTTCCTGCTGTGTATCTATGCAATACCAAAATTGGTGCAGACCATGAAAACAAGGAACTAAATATTGGTGGAAGTTTAGTCACTGCAATATTTGGAACTAACAAAGTTCCTTACATTATACTATTTGACTGTTTTACTAAACCTGGTGATGTTGCTcaagagtgtcgtcaaacacacaagagtgtcgtcaaacacaGATTGCTTGCAACACCTACACCACTTCTAATTAAGGATGTTTTCTCTGCACTACAAAAGATAAGTGTAGGCAGTGGAAGCACATCTCGGAAGAAAGGCATCATTGTTCATCTCATGCATTCCTACTGTGAGAAGGAGATGAAGTTTCTTGTTCGGACCTTGGTTTGGAACCTAAGGATTGGGGCAATGCTTAGAACTATTTTTCCTGCATTGGCTCATGCTATTGATATGAATTCTTGCCCTACTTTGCACCAAGAAGGAACTGCAAAAAATATAAAGGACAAACTCCAGGTTCTTTCTATGGCAGTTGTTGAAGCATATAACATACTGCCAAACTTAGATCTCATTGTTCCATGTGTCATGAACAAAGGGATTGATTTTTCAGTTTCAAGTTTATCAATGGTTCCAGGAATCACTATTAAGCCTATGCTAGAAAAGATCACCAATGGTATTCCCCAAGCATTGAAGCTATTTGAAAATAAAGCATTTACATGTGAATATAAGTATGATGGTCAACGGGCTCAAATTCACAAATTAGTTGATGGATCAATTTGTGTTTTTTCAAGAAATGGGGGTGAATCAACTTCGAGATTTCCTGATCTGATTGACATATTTAAGGGATCCAGCAAGTCGGTTGCATCAACTTTCATAATGGATGCAGAAATTGTTGATATTGACAGAAAAAATGGATATAGGATCATGTCTTTCCAGGTGCTATCTTCACGTAGGAGAGGTGGCAAAGATACATTAGTGGATATTTGCATCTTTGTCTTTGATATCATGTTTGCAAATGGAGAGCAGTTATTGGGTTTTCCTCTCCGCCTTAGACGAAAGTGTATGCATCTAATCATCTTATGTAAATCTTCTGCATTTGCTGGCAAGGCAAAAATGTACTTAGATGATGCTTGCTTAACCTATGAAGCCACATTAACTAAGATAAATGCTTTCCTGGAAGATGCACTTTGCTCTTCATGTGAAGGAATTTTGGTGAAAACATTGGATGTTGATGCTGGGTATTCTCCATCAAAGCATTCTGACAAATGGTTAAAAGTTAATTATGTGGAAGGATTAAATGATACTCTTTATTTAGTACCGATTGGTGCTTGGCATGAAAATGGAAGGAAAGCTGGATGGTATAGTCCATTTCTTATGGCATGTTTCAATCCTGAAGCAAAGAAGTATCAAAGTGTATGTTGTGTGATGTCTAGATTCTCAGATTCATTTTACAGAT 3400 0.4021 MDFETLDSTQLFLIALKTLQPQPSLQTHHPPHPFPCQRLQPRRPPLPLLRPLPFLVPRRHLLHLSPRRPRRPPPTLLAALHRRRPSHANHCPSAVQSLFIPRATDDTTALRYAHNSDFRFSNCMVSEPALAPFVGVDAMFLDTTYCNPNVECKCENNSNDKVLFLVATYVIGKEKILPKLARRFKRKIHVDARKMEVLRVLGYGENGEFIKDEKESNIHVVGWNVLGETWPYFRPNFVRMKEVVSFVPTQWTYEVKRNKFAVKSKDSFQINLVPYICDVEKSDSKHADKMRKYFTWLVDETANKQDFLRGFHCVPCEKGEVGFKAEKVVSDAREPGQDMDKEVNALEKTEGDIGIGPDVAVGLSSFMEETWSNVVEAVSNFYKRETEFHEQVISCQNPVSTPKGCSLNTDSLAKPCLNTNNTGKNINIFSSQDSKLNNLRHTVPSPISPAKRKRSSDSKQKKKKPKVKARSEPSGSKQATITRFFSKLIPEMPGGAHSYNSEPKLDQSSKVEDLLPTDDRQLYKDEIDQFMQIINGNESLKKYAITIIEKTKGDINKALDIYYGNSEYLGENKISVESKIDRPVKVLKDNVDATHLSLPPEKYNPKEHATCWRDGQPAPYLHIARTLNLLEGEKGKIKATSLLCNMFRSLSALSLADVLPAVYLCNTKIGADHENKELNIGGSLVTAIFGTNKVPYIILFDCFTKPGDVAQECRQTHKSVVKHRLLATPTPLLIKDVFSALQKISVGSGSTSRKKGIIVHLMHSYCEKEMKFLVRTLVWNLRIGAMLRTIFPALAHAIDMNSCPTLHQEGTAKNIKDKLQVLSMAVVEAYNILPNLDLIVPCVMNKGIDFSVSSLSMVPGITIKPMLEKITNGIPQALKLFENKAFTCEYKYDGQRAQIHKLVDGSICVFSRNGGESTSRFPDLIDIFKGSSKSVASTFIMDAEIVDIDRKNGYRIMSFQVLSSRRRGGKDTLVDICIFVFDIMFANGEQLLGFPLRLRRKCMHLIILCKSSAFAGKAKMYLDDACLTYEATLTKINAFLEDALCSSCEGILVKTLDVDAGYSPSKHSDKWLKVNYVEGLNDTLYLVPIGAWHENGRKAGWYSPFLMACFNPEAKKYQSVCCVMSRFSDSFYR 1133
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma02g00811 1133 PANTHER DNA LIGASE 1/3 FAMILY MEMBER 429 1132 - -
Gma02g00811 1133 TIGRFAM dnl1: DNA ligase I, ATP-dependent (dnl1) 718 1124 IPR000977 GO:0003910|GO:0005524|GO:0071897
Gma02g00811 1133 PANTHER DNA LIGASE 3 429 1132 - -
Gma02g00811 1133 Gene3D - 146 276 - -
Gma02g00811 1133 Gene3D - 1078 1133 IPR012340 -
Gma02g00811 1133 SUPERFAMILY DNA ligase/mRNA capping enzyme, catalytic domain 821 1074 - -
Gma02g00811 1133 ProSitePatterns ATP-dependent DNA ligase AMP-binding site. 889 897 IPR016059 GO:0003909
Gma02g00811 1133 MobiDBLite consensus disorder prediction 432 480 - -
Gma02g00811 1133 Pfam DNA ligase N terminus 619 795 IPR012308 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Gma02g00811 1133 SUPERFAMILY ATP-dependent DNA ligase DNA-binding domain 599 848 IPR036599 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Gma02g00811 1133 SUPERFAMILY Nucleic acid-binding proteins 1082 1133 IPR012340 -
Gma02g00811 1133 MobiDBLite consensus disorder prediction 492 511 - -
Gma02g00811 1133 CDD Adenylation_DNA_ligase_I_Euk 856 1074 - -
Gma02g00811 1133 Gene3D - 876 1077 - -
Gma02g00811 1133 Pfam ATP dependent DNA ligase domain 865 1074 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Gma02g00811 1133 Gene3D DNA ligase/mRNA capping enzyme 894 1017 - -
Gma02g00811 1133 ProSiteProfiles ATP-dependent DNA ligase family profile. 969 1111 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Gma02g00811 1133 Gene3D - 595 867 IPR036599 GO:0003677|GO:0003910|GO:0006281|GO:0006310
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma02g00811 Gma-Chr2 8035391 8072059 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma02g00811 600 1131 Core DNA Replication Machinery Family AT1G08130 33.333 5.41e-91 308
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma02g00811 - - gmx:100807673 1602.8