Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma02g00782 ATGTTTTCGAAGGCTATGGAGAATGGAGATTCCTTCTTCCGTCATGGTCAACCTACAAAATCAACTTTGGGTTCAATTATCCCTTTTCAACAAACAGACACCTATGCAAACACAACAATTCAACCACCAATCAACTCAAACAATGGTGGTCCAATTCCTAGTTTGGTTCTGCGAGATAAGAGTAAGATGCCAATTACAAATGTGACAAAAATCACAGGTCAGATTCTTCCAAATAATGCAAAAATTTCATATGATGCCATGGATATGATTCAACAAGGTGCTACAAAGTACATAAACTTTGTAACGAGAAAAGCCAAGGAGCAATGCCAAAGTGAGTATAGAAAGATTATGAATGCAGAGGACCTATTATGGGCCATGAAGAAATTGGGCTTTAATGACTATGTTGAGCCTCTCACTGCTTTTGTCCAACGCTATCGTAACATTGAAGGAAGTGATCTCTTCACTAGCCATAAGGAGCCCATTCCTCACATTGAAAACAATGAGCCTAGGCCTAACCCTATGCCCACTTTGGAGATACTTCACTCTCCAGTACCACCGCCAGTTCATTCTTCTAAGCCATACTTTTCCATTGACACCAGCCATAGGGAGCTCATTCCTCACACTGAAAACAATGGGCCTAGTCTTGGGCTTGAGCCTAACCATATGCCCACTTTCGAGATGACTCCACTATCACCATCAGTTCATCCTTTTGAGTCATACTTTTCCATCGATCCTGACACAAATTTAGAAATACTTGACCCAAATGACATCAATGAGATCTACCTAGATGAATTTGGTGTCGGTTGTTCAAATGATGCTTTCAACAATGTTGATGTTTCCGCTCTCTTCAAACATGATCAACCGTGA 867 0.4072 MFSKAMENGDSFFRHGQPTKSTLGSIIPFQQTDTYANTTIQPPINSNNGGPIPSLVLRDKSKMPITNVTKITGQILPNNAKISYDAMDMIQQGATKYINFVTRKAKEQCQSEYRKIMNAEDLLWAMKKLGFNDYVEPLTAFVQRYRNIEGSDLFTSHKEPIPHIENNEPRPNPMPTLEILHSPVPPPVHSSKPYFSIDTSHRELIPHTENNGPSLGLEPNHMPTFEMTPLSPSVHPFESYFSIDPDTNLEILDPNDINEIYLDEFGVGCSNDAFNNVDVSALFKHDQP 288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma02g00782 288 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 62 126 IPR003958 -
Gma02g00782 288 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 58 236 IPR027113 GO:0001228|GO:0006355|GO:0016602
Gma02g00782 288 PRINTS CCAAT-binding transcription factor subunit A signature 90 108 - -
Gma02g00782 288 PRINTS CCAAT-binding transcription factor subunit A signature 109 127 - -
Gma02g00782 288 PRINTS CCAAT-binding transcription factor subunit A signature 128 146 - -
Gma02g00782 288 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-6 58 236 - -
Gma02g00782 288 Gene3D Histone, subunit A 56 167 IPR009072 GO:0046982
Gma02g00782 288 SUPERFAMILY Histone-fold 62 168 IPR009072 GO:0046982
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma02g00782 Gma-Chr2 7627024 7630302 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma02g00782 43 195 CCAAT-HAP3 Transcription Factor Family AT5G47670 40.260 1.61e-32 118
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Gma02g00782 CBFD_NFYB_HMF 1.9e-14 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma02g00782 K08065 - pda:103724115 123.25