Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma02g00781 ATGTCCCAATTGAAGCAAATTCAGGCCCACATATTCTGTTTTGGCCTTCAACAAGACAGAGACATCCTCAACAAGCTCATGGCCTTTTCCATGGACTCATCCCTAGGGGATTTTAACTATGCAAACAGAATCTTCAACCACATTCATCACCCCTCCTTGTTTATCTACAACCTCATGATCAAGGCCTTTGTGAAAAGGGGTAGTTTAAGGAGTGCCATTTCTCTTTTTCAGCAGCTGAGGGAACGTGGGGTGTGGCCCGATAACTACACCTACCCTTATGTTTTGAAGGGTATTGGTTGCATTGGGGAGGTTAGGGAAGGGGAAAAGATTCATGCTTTTGTGGTTAAGACTGGCCTTGAGTTTGACCCTTATGTGTGTAACTCCTTGATGGATATGTATGCTGAGTTGGGCCTGGTTGAGGGGTTCACACAGGTGTTTGAGGAAATGCCTGAGAGGGATGCGGTTTCTTGGAACATCATGATTTCGGGTTATGTCAGATGCAAGAGGTTTGAGGAGGCTGTTGATGTTTACCGGCGGATGCAGATGGAGAGCAATGAGAAGCCCAATGAAGCCACGGTTGTGAGCACTCTGTCGGCTTGTGCGGTATTGAGAAATTTGGAGCTTGGCAAGGAAATCCATGATTACATTGCAAATGAACTGGACCTTACTCCTATAATGGGGAATGCTTTGTTGGACATGTATTGTAAGTGTGGGTGTGTGAGCGTGGCCAGGGAGATTTTCGATGCAATGATCGTGAAGAATGTGAATTGTTGGACCAGTATGGTAACTGGGTATGTGATCTGTGGTCAGTTGGATCAAGCTCGGTATTTGTTTGAGAGGAGTCCAAGTAGGGATGTTGTTCTTTGGACAGCTATGATTAATGGGTATGTGCAGTTTAATCATTTTGAAGATGCAATCGCATTATTTGGGGAGATGCAGATCAGAGGTGTGGAACCAGATAAGTTCATTGTGGTTACTCTCCTTACAGGTTGTGCTCAATTGGGAGCTCTGGAGCAGGGCAAGTGGATTCATAATTACATAGATGAAAACAGAATTAAGATGGATGCTGTGGTTAGTACTGCCCTTATTGAAATGTATGCTAAATGTGGTTGCATAGAAAAATCTTTGGAAATTTTTAATGGATTGAAGGATATGGACACGACCTCATGGACTTCAATTATTTGTGGGCTGGCCATGAATGGTAAAACAAGTGAAGCACTTGAGTTGTTTGAAGCAATGCAAACATGTGGATTAAAACCTGATGATATTACTTTTGTTGCTGTTTTAAGTGCTTGTGGTCATGCAGGATTGGTCGAAGAGGGCCGCAAGTTATTTCATTCCATGTCAAGTATATATCACATTGAGCCAAATTTAGAGCACTACGGGTGTTTCATTGACCTTCTTGGTCGAGCCGGACTTTTACAAGAGGCAGAGGAGTTGGTGAAGAAGTTACCAGATCAAAACAACGAAATAATAGTTCCACTTTATGGAGCTTTGCTAAGCGCCTGCCGAACTTATGGCAATATTGATATGGGTGAAAGGCTTGCTACAGCCCTAGCAAAAGTTAAATCCAGCGATTCAAGTCTTCATACACTTCTTGCTAGCATTTATGCTTCTGCTGACAGATGGGAAGATGTGAGAAAGGTGAGAAGTAAGATGAAAGATCTAGGAATCAAAAAGGTGCCAGGATATAGTGCCATTGAGGTGGATGGCTAG 1716 0.4318 MSQLKQIQAHIFCFGLQQDRDILNKLMAFSMDSSLGDFNYANRIFNHIHHPSLFIYNLMIKAFVKRGSLRSAISLFQQLRERGVWPDNYTYPYVLKGIGCIGEVREGEKIHAFVVKTGLEFDPYVCNSLMDMYAELGLVEGFTQVFEEMPERDAVSWNIMISGYVRCKRFEEAVDVYRRMQMESNEKPNEATVVSTLSACAVLRNLELGKEIHDYIANELDLTPIMGNALLDMYCKCGCVSVAREIFDAMIVKNVNCWTSMVTGYVICGQLDQARYLFERSPSRDVVLWTAMINGYVQFNHFEDAIALFGEMQIRGVEPDKFIVVTLLTGCAQLGALEQGKWIHNYIDENRIKMDAVVSTALIEMYAKCGCIEKSLEIFNGLKDMDTTSWTSIICGLAMNGKTSEALELFEAMQTCGLKPDDITFVAVLSACGHAGLVEEGRKLFHSMSSIYHIEPNLEHYGCFIDLLGRAGLLQEAEELVKKLPDQNNEIIVPLYGALLSACRTYGNIDMGERLATALAKVKSSDSSLHTLLASIYASADRWEDVRKVRSKMKDLGIKKVPGYSAIEVDG 571
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma02g00781 571 Pfam PPR repeat 228 255 IPR002885 -
Gma02g00781 571 Pfam PPR repeat 257 281 IPR002885 -
Gma02g00781 571 Pfam PPR repeat 460 484 IPR002885 -
Gma02g00781 571 Pfam PPR repeat 125 152 IPR002885 -
Gma02g00781 571 Pfam PPR repeat 359 384 IPR002885 -
Gma02g00781 571 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 52 86 IPR002885 -
Gma02g00781 571 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 386 420 IPR002885 -
Gma02g00781 571 PANTHER OS06G0597500 PROTEIN 1 569 - -
Gma02g00781 571 TIGRFAM PPR: pentatricopeptide repeat domain 155 190 IPR002885 -
Gma02g00781 571 TIGRFAM PPR: pentatricopeptide repeat domain 55 84 IPR002885 -
Gma02g00781 571 TIGRFAM PPR: pentatricopeptide repeat domain 389 421 IPR002885 -
Gma02g00781 571 TIGRFAM PPR: pentatricopeptide repeat domain 287 320 IPR002885 -
Gma02g00781 571 TIGRFAM PPR: pentatricopeptide repeat domain 124 153 IPR002885 -
Gma02g00781 571 TIGRFAM PPR: pentatricopeptide repeat domain 228 255 IPR002885 -
Gma02g00781 571 TIGRFAM PPR: pentatricopeptide repeat domain 423 450 IPR002885 -
Gma02g00781 571 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 1 569 - -
Gma02g00781 571 Pfam E motif 506 568 IPR046848 -
Gma02g00781 571 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 285 319 IPR002885 -
Gma02g00781 571 Gene3D Tetratricopeptide repeat domain 220 348 IPR011990 GO:0005515
Gma02g00781 571 Coils Coil 470 490 - -
Gma02g00781 571 Gene3D Tetratricopeptide repeat domain 59 219 IPR011990 GO:0005515
Gma02g00781 571 Gene3D Tetratricopeptide repeat domain 385 567 IPR011990 GO:0005515
Gma02g00781 571 Pfam PPR repeat family 284 332 IPR002885 -
Gma02g00781 571 Pfam PPR repeat family 153 201 IPR002885 -
Gma02g00781 571 Pfam PPR repeat family 51 97 IPR002885 -
Gma02g00781 571 Pfam PPR repeat family 386 432 IPR002885 -
Gma02g00781 571 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 153 187 IPR002885 -
Gma02g00781 571 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 122 152 IPR002885 -
Gma02g00781 571 SUPERFAMILY TPR-like 131 302 IPR011990 GO:0005515
Gma02g00781 571 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 223 257 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma02g00781 Gma-Chr2 7624531 7626246 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma02g00781 38 569 Glycoside Hydrolase AT3G49170 30.224 2.27e-83 276
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma02g00781 - - gmx:100819789 1154.04
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma01g00925 01 29860316 29869634 Gma02g00781 02 7624531 7626246 GST