LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gma02g00704	ATGGCGGGAGCAACAGGCAGAACCCTCTTCACCCTCTCCCTCTCTTCCTCCTCTTCCCTCACGCGCCTCTCTCTCATCCCCAAGCGCGTCCCACTCCCCAAACCCCTCCCCCTCTTCCGCCGCTTCCGCCCTCTCTGCTCCGTCTCCGCCGCCGCGCCGGAAGCTGCCGACGCGAAGCACTCAATACTCCTCGAGAGGCTCCGGTCCCGACACCTCCGTGACGCCGCGAAGGCCGCCCCCGAACCGAGGAAGAAGGAGAAGGTcgccgccgcagccgcagccgccgccgccgccgccgAAGCGAAGGAGAAGAAGAAGGCGGTTGCGAGCTTCGAGGAGCTGGGACTGAGTGAGGAGGTCATGGGGGCTGTTAGGGAAATGGGAATTGAAGTTCCCACTGAGATACAGAGCATTGGCATCCCTGCCGTTTTGGAAGAGAAGAGCGTCGTTTTGGGGTCGCACACTGGCTCTGGCAAAACCCTCGCTTACTTGCTTCCCCTTGCTCAGTTGTTAAGACGGGACGAACAATTGAATGGAATACTGTTGAAGCCCAGGCGTCCACGAGCTGTTGTGCTGTGTCCTACGAGGGAGTTATCCGAGCAGGTTTTTCGAGTTGCAAAATCGATAAGCCATCATGCACGATTCAGGTGTACCATGGTAAGTGGTGGTGGCCGGCTTAGGCCTCAGGAGGATTCACTTAATAACCCCATTGATGTGGTAGTTGGTACCCCTGGCAGGGTTCTTCAACATATTGAGGAGGGAAATATGGTATATGGTGACATCAAATACTTGGTTTTGGATGAGGCGGACACAATGTTTGATCGGGGCTTTGGTCCTGATATACGCAAATTTATAGGCCCATTAAAAAATCGTGCTTCAAAACCTGATGGCCTAGGTTTTCAGACTATCTTGGTAACTGCAACCATGACAAAGGCTGTGCAAAATCTGATTGATGAGGAGTTTCTAGGCATTGTTCATCTGCGCACGTCAACATTGCATAAAAAGATTTCTTCTGCTCGTCATGATTTTATTAAACTTGCAGGTTCTGAGAACAAGCTTGAAGCATTACTTCAGGTACTAGAGCCAAGCCTAGCAAAAGGGAATAGGGTGATGGTTTTCTGCAATACATTGGATTCAAGTCGTGCTGTGGATCATTTTCTTGGTGAAAATCAGATTTCTGCTGTGAACTACCATGGGGAGGTACCAGCAGAGCAAAGGGTTGAAAATCTCAGAAAGTTCAAGAGTGATGGTGATGATTGTCCTACATTGGTTTGCACGGACTTGGCTGCTAGGGGTCTAGACTTGGATGTAGATCATGTTGTCATGTTTGACTTCCCCTTGAATTCCATTGACTACCTTCATCGCACTGGTAGAACTGCTCGTATGGGTGCAAAAGGGAAGGTAACAAGTTTAGTTGCTAAAAAGGACTTGGACTTGGCCAGCAAAATAGAGGACGCATTAAGGAAGAATGAGAGTTTGGAGGCTATCACAAAAGAAAGTGTCCGAAGGGACATTGCAAGGACCCAAAATCAAAGCACTGAGAAGGGAAAGAGCAAAAGATTGGTTAAAGTTTCAAAAGTTATGGGCAAATCTGGTAGTCGTTTTGGTTCTGGGAATAATGGATCAGGTATGAAATCTGGTAAAGGGTCACCAGTCAAATCTATGAAGAAAGGGATTCAAGTTTCAAAATCTGGAAAATCTTCTAGTGCAAATAGCTTAAGAAAAGCTTCTACAGAGAAGAGGCAATCAAGTAAAATGGTCAGTGCCACCAAATCTACGAATTCTAAACTCAATGTTGTGGGGTTTAGGGGGAAAAATTCGTCTTCAAATAATAAAGAATCGGGTTTGTGA	1851	0.4652	MAGATGRTLFTLSLSSSSSLTRLSLIPKRVPLPKPLPLFRRFRPLCSVSAAAPEAADAKHSILLERLRSRHLRDAAKAAPEPRKKEKVAAAAAAAAAAAEAKEKKKAVASFEELGLSEEVMGAVREMGIEVPTEIQSIGIPAVLEEKSVVLGSHTGSGKTLAYLLPLAQLLRRDEQLNGILLKPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRCTMVSGGGRLRPQEDSLNNPIDVVVGTPGRVLQHIEEGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFIGPLKNRASKPDGLGFQTILVTATMTKAVQNLIDEEFLGIVHLRTSTLHKKISSARHDFIKLAGSENKLEALLQVLEPSLAKGNRVMVFCNTLDSSRAVDHFLGENQISAVNYHGEVPAEQRVENLRKFKSDGDDCPTLVCTDLAARGLDLDVDHVVMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDLDLASKIEDALRKNESLEAITKESVRRDIARTQNQSTEKGKSKRLVKVSKVMGKSGSRFGSGNNGSGMKSGKGSPVKSMKKGIQVSKSGKSSSANSLRKASTEKRQSSKMVSATKSTNSKLNVVGFRGKNSSSNNKESGL	616

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Gma02g00704	616	MobiDBLite	consensus disorder prediction	504	521	-	-
	Gma02g00704	616	Pfam	DEAD/DEAH box helicase	133	316	IPR011545	GO:0003676\|GO:0005524
	Gma02g00704	616	ProSiteProfiles	DEAD-box RNA helicase Q motif profile.	109	137	IPR014014	GO:0003724
	Gma02g00704	616	ProSiteProfiles	Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile.	140	327	IPR014001	-
	Gma02g00704	616	MobiDBLite	consensus disorder prediction	560	616	-	-
	Gma02g00704	616	PANTHER	DEAD-BOX ATP-DEPENDENT RNA HELICASE 39	27	532	-	-
	Gma02g00704	616	Gene3D	-	73	324	IPR027417	-
	Gma02g00704	616	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	140	474	IPR027417	-
	Gma02g00704	616	MobiDBLite	consensus disorder prediction	532	547	-	-
	Gma02g00704	616	Gene3D	-	339	537	IPR027417	-
	Gma02g00704	616	Pfam	Helicase conserved C-terminal domain	352	463	IPR001650	-
	Gma02g00704	616	ProSiteProfiles	Superfamilies 1 and 2 helicase C-terminal domain profile.	352	505	IPR001650	-
	Gma02g00704	616	PANTHER	DEAD-BOX ATP-DEPENDENT RNA HELICASE 50	27	532	-	-
	Gma02g00704	616	MobiDBLite	consensus disorder prediction	504	616	-	-
	Gma02g00704	616	CDD	SF2_C_DEAD	340	472	-	-
	Gma02g00704	616	CDD	DEADc	120	319	-	-
	Gma02g00704	616	SMART	ultradead3	128	337	IPR014001	-
	Gma02g00704	616	SMART	helicmild6	381	463	IPR001650	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Gma02g00704	Gma-Chr2	6781554	6790192	Proximal

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Gma02g00704	76	484	Eukaryotic Initiation Factors Gene Family	AT3G19760	27.361	1.41e-41	154

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Gma02g00704	-		-	gmx:100805709	1014.99