Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma02g00698 ATGGCGGCGGCGATGGTTCCAGCAGGAGCATTGAACGGTATGCAATCTGGGAATGCCTCTTTGTACGTTGGTGATCTTGAAAGGAACGTTGACGAGGCGCAGCTGTTTCAACTGTTTGCCCGAGTGGGCCCAATATTTTCAATTAGAGTTTGTAGGGATGAGACAAACCGATCTCTTGGATATGCTTATGTTAACTTTGTCAACCCACAGGATGCTGCTAATGCCATGGAGCATCTGAATTTCACTCCTCTGAATGGAAAATCCATTCGTGTTATGTTTTCTAACCGAGATCCTAGCATTCGAAAAAGTGGATATGCAAATGTGTTTATCAAGAACCTTGACATATCAATAGATAACAAGACATTGCATGACACTTTTGCTGCCTTTGGATTTGTACTCTCTAGTAAGGTAGCCGTTGATAGCATTGGTCAGTCGAAAGGGTATGGATTTGTGCAATTTGACAATGAAGAGTCTGCGCAAAATGCTATCAAAGAGTTGAATGGCATGTTGATAAATGATAAAAAAGTCTATGTTGGACTCTTTGTTAATCGCCAGGAAAGGGCTCAGGTAGATGGATCACCAAAGTTCACCAATGTGTATGTGAAAAACTTTTCCGAAACATATACTGATGAAGATCTTGAGCAGCTCTTTAGCACCTATGGTACAATAACTAGTGCTGTGGTCATGAAAGACACAGATGGAAAATCTAGATGTTTTGGTTTTGTGAATTTCGAAAGTCCAGATTCAGCGGTTGCTGCGGTTGAAAGGTTAAACGGAACCACAGTCAATGATGATAAGGTTTTATATGTAGGGAGAGCTCAAAGAAAAGCAGAAAGAGAGGCGGAGTTGAAAGCCAGATTTGAGTTGGAAAGAATAAGGAAATATGAAAAATACCATGGTACTAATTTGTACGTGAAAAACCTTGACTATAATATCAATGATGACAAATTGAAGGAGCTGTTTTCTGAGTTTGGAACAATAACATCTTGCAAGGTGATGCTTGAACCGAATGGGCGTAGCAAGGGTTATGGTTTTGTTGCCTTTTCTGCTCCTCGGAATGCAAATAGAGCCTTGCATGAAATGAATGGAAAGATGATTGGACGGAGGCCCCTATATGTAGCTGTGGCCCAACGCAAAGAAGAGAGGAAGGCTCTTTTGGAGGCTCAATTTTCTCAAATGCATGCCCTATATGCAATCACGCATTTACCTACGGGAATCCCTGTATATCATCCAGGGGCACCAAGACATGGCCCTCAAGCATTGCATTATGGTCAAGGGGCACCAAGTCTTGTAGCACCTCAACCAACAGGATATGGTTTCCAGCAGCAGCTCTTGCCGGGCATGCATCCTGGTGTTGCTCCAAATTTCATCATGCCATACCACCGCCAGAGACAGGTTCCTCCAAGACTTAGAAATCTCCACCGGAACCAGATGTTGCATCTTAACTCCAGCCAAGGGTTTGGATACATGGGAAATGGTCAAAATGGCATGGATCCGTCAGTAGTTCCCCATGGTATAGTGGCTCCAATGATGCCATTGCCCTTTGATGGTTCAGGAATTTCCGCAGCTCCTACTTATAATCAGCATCCTGGTGGTTCATTGTCCAACACATTTGCCTCAGCTCTGGCTTCTGCTACCCCAGAAAATCAGCACCTGATGCTAGCTGAACATCTATATCCACTTGTGGACGAAATTACTAAAAATCATCATCAGACTGAAAAGGTGACAGGAATGTTGTTGGAAATGGATCAGTCGGAGGTCATCCATCTGACTGAGTCTCCCGAGGACTTGAAAATAAAGGTGTTTGAGGCAATGCAGGCCCTTGGTGAAGCCGCACCAGATTCTGAAGAAGTTGGTGATCAACTTGGCTCAGTCTCATTGAAGGAATGA 1890 0.436 MAAAMVPAGALNGMQSGNASLYVGDLERNVDEAQLFQLFARVGPIFSIRVCRDETNRSLGYAYVNFVNPQDAANAMEHLNFTPLNGKSIRVMFSNRDPSIRKSGYANVFIKNLDISIDNKTLHDTFAAFGFVLSSKVAVDSIGQSKGYGFVQFDNEESAQNAIKELNGMLINDKKVYVGLFVNRQERAQVDGSPKFTNVYVKNFSETYTDEDLEQLFSTYGTITSAVVMKDTDGKSRCFGFVNFESPDSAVAAVERLNGTTVNDDKVLYVGRAQRKAEREAELKARFELERIRKYEKYHGTNLYVKNLDYNINDDKLKELFSEFGTITSCKVMLEPNGRSKGYGFVAFSAPRNANRALHEMNGKMIGRRPLYVAVAQRKEERKALLEAQFSQMHALYAITHLPTGIPVYHPGAPRHGPQALHYGQGAPSLVAPQPTGYGFQQQLLPGMHPGVAPNFIMPYHRQRQVPPRLRNLHRNQMLHLNSSQGFGYMGNGQNGMDPSVVPHGIVAPMMPLPFDGSGISAAPTYNQHPGGSLSNTFASALASATPENQHLMLAEHLYPLVDEITKNHHQTEKVTGMLLEMDQSEVIHLTESPEDLKIKVFEAMQALGEAAPDSEEVGDQLGSVSLKE 629
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma02g00698 629 Gene3D - 12 106 IPR012677 -
Gma02g00698 629 TIGRFAM PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family 19 608 IPR006515 GO:0003723
Gma02g00698 629 SMART poly_2 546 611 IPR002004 GO:0003723
Gma02g00698 629 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 197 275 IPR000504 GO:0003723
Gma02g00698 629 Gene3D - 289 385 IPR012677 -
Gma02g00698 629 PANTHER POLYADENYLATE-BINDING PROTEIN 10 616 - -
Gma02g00698 629 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 19 96 IPR000504 GO:0003723
Gma02g00698 629 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 21 90 IPR000504 GO:0003723
Gma02g00698 629 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 108 176 IPR000504 GO:0003723
Gma02g00698 629 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 199 266 IPR000504 GO:0003723
Gma02g00698 629 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 303 371 IPR000504 GO:0003723
Gma02g00698 629 Gene3D - 107 180 IPR012677 -
Gma02g00698 629 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 106 183 IPR000504 GO:0003723
Gma02g00698 629 Gene3D - 183 288 IPR012677 -
Gma02g00698 629 CDD RRM1_I_PABPs 20 98 - -
Gma02g00698 629 SUPERFAMILY PABC (PABP) domain 490 617 IPR036053 GO:0003723
Gma02g00698 629 CDD RRM3_I_PABPs 196 276 - -
Gma02g00698 629 CDD RRM4_I_PABPs 300 378 - -
Gma02g00698 629 Gene3D - 532 612 - -
Gma02g00698 629 SUPERFAMILY RNA-binding domain, RBD 194 282 IPR035979 GO:0003676
Gma02g00698 629 ProSiteProfiles Poly(A)-binding protein C-terminal (PABC) domain profile. 534 613 IPR002004 GO:0003723
Gma02g00698 629 SUPERFAMILY RNA-binding domain, RBD 297 384 IPR035979 GO:0003676
Gma02g00698 629 SUPERFAMILY RNA-binding domain, RBD 19 186 IPR035979 GO:0003676
Gma02g00698 629 CDD RRM2_I_PABPs 104 179 IPR045305 -
Gma02g00698 629 MobiDBLite consensus disorder prediction 610 629 - -
Gma02g00698 629 SMART rrm2_1 302 374 IPR003954 GO:0003676
Gma02g00698 629 SMART rrm2_1 107 179 IPR003954 GO:0003676
Gma02g00698 629 SMART rrm2_1 20 92 IPR003954 GO:0003676
Gma02g00698 629 SMART rrm2_1 198 270 IPR003954 GO:0003676
Gma02g00698 629 SMART rrm1_1 302 374 IPR000504 GO:0003723
Gma02g00698 629 SMART rrm1_1 20 92 IPR000504 GO:0003723
Gma02g00698 629 SMART rrm1_1 107 179 IPR000504 GO:0003723
Gma02g00698 629 SMART rrm1_1 198 271 IPR000504 GO:0003723
Gma02g00698 629 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 301 378 IPR000504 GO:0003723
Gma02g00698 629 PANTHER RNA BINDING PROTEIN 10 616 - -
Gma02g00698 629 Pfam Poly-adenylate binding protein, unique domain 542 608 IPR002004 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma02g00698 Gma-Chr2 6744535 6749078 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma02g00698 18 612 Eukaryotic Initiation Factors Gene Family AT1G71770 53.171 0.0 625
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma02g00698 K13126 - gmx:100798998 1264.21