Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma02g00680 ATGGAAGATTCAGAGGAAGAAGAGCTTCTGAATCTTACTCTTTCAGTTGATGCCGGTAGGGAGAGGAGAATTAAGAAAGGAAGGACAAGGGATAATAATAATAACACTAATTCTGTTATTATTCCTATGAAGTCCAATGACGGGTATGAAGGGAAGATCTTCAGGCTCCTCCAAATGAGGGAGCTGATGCTAAGACAAGACCACAGAAGAAAAGGAGTGCTACTTGAAGATGTGAACAACAACAACAACAATGGCCTTCCTTTGATTCATTTGCTTCTCTCAACAGCCACTGCTGTTGATGATGATCAAAGAAACTATTGTGCCGCTCTTGAGAATCTCATTGACTTATACCAAACAGTTTCCCTAACAGGTGACTCGGTCCAACGTGTTGTGGCCTATTTCGCTGATGGTTTGGCTGCAAGGCTTCTCACAAAAAAGTCACCTTTCTATGACATGCTCATGGAGGAACCAACAAGTGAGGAAGAGTTTCTTGCATTCACTGATCTCTATAGAGTCTCACCCTATTACCAATTTGCTCACTTCACAGCAAACCAGGCCATTTTGGAGGCCTATGAGGAGGAGGAAGAGAGGAACAACAAAGCACTTCATGTCATTGACTTTGATATTTCCTATGGCTTCCAATGGCCTTCTCTCATTCAATCACTTTCACAAAAGGCAACAAGTGGCAAGAGAATTTTCCTCAGGATAACAGGTTTTGGGAACAACCTGAAAGAACTTCAAGAAACTGAGGCAAGGTTGGTTAGTTTCTCAAAGGGGTTTGGTAATCACCTTGTGTTTGAATTCCAAGGGATTTTAAGAGGTTCATCAAGGGCCTTCAACCTTAGGAAAAGGAAAAATGAAATTGTGGCAGTGAACCTTGTTTCTTATTTGAACACTTTGAGTAGTTTCATGAAGGTGTCTCACACATTGGGATTTGTTCATTCTCTTAGCCCCTCCATTGTGGTGTTGGTGAAACAAGAAGGTAGCTGCAGGAGTCTCAAGACCTTCTTGTCAAGGTTCACTGAGTCTTTGCACTATTTTGCAGCCATGTTTGATTCACTGGATGATTGCTTGCCACTTGAGAGCACTGAGAGGTTGAGGATTGAGAAGCAGCTTTTGGGGAAAGAGATCAAGAGCATGCTTAACTATGACATGGATGATGGTGTGGAATATTATTGCCCCAAATATGAGAGGATGGAAACATGGAAAGGGAGAATGGAGAATCATGGGTTTGTTGGGAGAAAAATAAGCTCAAAGTGTGTGATCCAAGCAAAGCTGCTTCTGAAGATGAGGACACATTATTATCCACTACAGTTTGAGGAAGAGGGTGGTGGGGGATTCAGAGTTTCTGAAAGGGATGAAGGGAGAGTTATCTCTTTGGGGTGGCAAAATAGGTTTCTTCTCACTGTCTCAGCATGGCAACCAGTTTGA 1431 0.4242 MEDSEEEELLNLTLSVDAGRERRIKKGRTRDNNNNTNSVIIPMKSNDGYEGKIFRLLQMRELMLRQDHRRKGVLLEDVNNNNNNGLPLIHLLLSTATAVDDDQRNYCAALENLIDLYQTVSLTGDSVQRVVAYFADGLAARLLTKKSPFYDMLMEEPTSEEEFLAFTDLYRVSPYYQFAHFTANQAILEAYEEEEERNNKALHVIDFDISYGFQWPSLIQSLSQKATSGKRIFLRITGFGNNLKELQETEARLVSFSKGFGNHLVFEFQGILRGSSRAFNLRKRKNEIVAVNLVSYLNTLSSFMKVSHTLGFVHSLSPSIVVLVKQEGSCRSLKTFLSRFTESLHYFAAMFDSLDDCLPLESTERLRIEKQLLGKEIKSMLNYDMDDGVEYYCPKYERMETWKGRMENHGFVGRKISSKCVIQAKLLLKMRTHYYPLQFEEEGGGGFRVSERDEGRVISLGWQNRFLLTVSAWQPV 476
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma02g00680 476 Pfam GRAS domain family 88 474 IPR005202 -
Gma02g00680 476 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 8 474 IPR005202 -
Gma02g00680 476 ProSiteProfiles GRAS family profile. 79 474 IPR005202 -
Gma02g00680 476 PANTHER OSJNBA0084A10.13 PROTEIN 8 474 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma02g00680 Gma-Chr2 6560393 6561823 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma02g00680 80 474 GRAS Transcription Factor Family AT1G14920 34.314 2.13e-54 189
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Gma02g00680 GRAS 2.3e-87 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma02g00680 - - gmx:100778791 904.434
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma16g01428 16 33304923 33306594 Gma02g00680 02 6560393 6561823 GST
Gma02g00680 02 6560393 6561823 Gma10g02060 10 48124784 48126181 PCT
Gma02g00680 02 6560393 6561823 Gma20g01655 20 43647188 43648576 PCT
Gma10g02060 10 48124784 48126181 Gma02g00680 02 6560393 6561823 PCT
Gma20g01655 20 43647188 43648576 Gma02g00680 02 6560393 6561823 PCT